Query= MSMg01no116_e02.b1 MSMg01no116_e02.b1 CHROMAT_FILE:
MSMg01no116_e02.b1 PHD_FILE: MSMg01no116_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:27 2005
(648 letters)
>mm_chr1_53114788_53115829
Length = 1042
Score = 1127 bits (583), Expect = 0.0
Identities = 627/645 (97%), Gaps = 8/645 (1%)
Strand = Plus / Plus
Query: 5 gaattcttcacgaaccactctaatgcaaattcctaacctcctctccctctgtttttgaac 64
||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 gaattcttcacaaagcactctaatgcaaattcctaaccttctctccctctgtttttgaac 264
Query: 65 cacatcattaaagttcttgaagtgtagtagttccctcaatctggaaagaataaaatcaca 124
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 265 cacatcattaaagttcttgcagtgtagtagttccctgaatctggaaagaataaaatcaca 324
Query: 125 aattcttttgataaatatatttttatactctccaatgtgtcatgagacaatcaatctatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aattcttttgataaatatatttttatactctccaatgtgtcatgagacaatcaatctatg 384
Query: 185 ggattttgaatagagattagaaagtatgcttgctgtctcactaatgagtacaaaaatgcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggattttgaatagagattagaaagtatgcttgctgtctcactaatgagtacaaaaatgcc 444
Query: 245 agcccacaatagtccaccaatacaaagactaatataagccctgatggccatggcttgcat 304
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 445 agcccacaatagtccaccaatacaaagactaatataagccttgatggccatggcttgcat 504
Query: 305 cccaccttctgacccagtgagaaactcttttcaaagatggtggccaacacaagggcaaca 364
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cccaccttctgaccca------aactcttttcaaagatggtggccaacacaagggcaaca 558
Query: 365 agctggaagaccaagttcttctgggcaagtggaagaaattctctcttcactcatccaaaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 agctggaagaccaagttcttctgggcaagtggaagaaattctctcttcactcatccaaaa 618
Query: 425 gttatcccagcctgactccattttgaaagctgcctccattctcagggcacagtaaggagt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gttatcccagcctgactccattttgaaagctgcctccattctcagggcacagtaaggagt 678
Query: 485 cctctgtgttac-caggccttgggaagctggcaattgtcaccattagagaaggaacagct 543
||||||||| || | ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 679 cctctgtgtcactc-ggccttgggaagctggcaattgtcaccattagagaaggaacagtt 737
Query: 544 gttcttgaaactgactaaatacttcttaacccatacacttaaggagtgagtgaagtatca 603
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gttcttaaaactgactaaatacttcttaacccatacacttaaggagtgagtgaagtatca 797
Query: 604 gaaagtttaattaggtacaatcagtgatggccactaatggtctaa 648
|||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 798 gaaagtttgattaggtacaatcagtgatggccactaatggtctaa 842
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1042
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1032
Effective search space: 658416
Effective search space used: 658416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no116_e02.g1 MSMg01no116_e02.g1 CHROMAT_FILE:
MSMg01no116_e02.g1 PHD_FILE: MSMg01no116_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:27 2005
(626 letters)
>mm_chr1_53166508_53167533
Length = 1026
Score = 1141 bits (590), Expect = 0.0
Identities = 611/626 (97%), Gaps = 13/626 (2%)
Strand = Plus / Minus
Query: 1 taatgtgccattttctggccatcgaggctgattatctagtttatagaggtcaagccattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 taatgtgccattttctggccatcgaggctgattatctagtttatagaggtcaagccattt 689
Query: 61 tcaataagacatcatggcttaatggaatctctgagtctaagaatggaagtagattagaga 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gcaataagacatcatggcttaatggaatctctgagtctaagaatggaagtagattagaga 629
Query: 121 acgtaggcaagaggagctgacaagtttaacaagtaccaatgtcacttcatgctccaggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 acgtaggcaagaggagctgacaagtttaacaagtaccaatgtcacttcatgctccaggaa 569
Query: 181 gctagtgagagacagagcagagagaagggacatgtccaggagcttttcctgaagaaaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gctagtgagagacagagcagagagaagggacatgtccaggagcttttcctgaagaaaaag 509
Query: 241 agatgcaccagagagatttcctgaatcacagtgcagattcatccttcccacgtgatgggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 agatgcaccagagagatttcctgaatcacagtgcagattcatccttcccacgtgatgggc 449
Query: 301 ataaggagtctgcctgactcaccatcatgactatcgctgatcatgttcccgaaagacaga 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ataaggagtctgcctgacttaccatcatgactatcgctgatcatgttcccgaaagacaga 389
Query: 361 gagagacagaacaggcagttactgccaagaaaatgcataacaatatatgctagttgaagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gagagacagaacaggcagttactgccaagaaaatgcataacaatatatgctagttgaagg 329
Query: 421 agagaaataaaatgattaggaaatacttagtaaatttcaaaatagaaaagaaaaatatat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 agagaaataaaatgattaggaaatacttagtaaatttcaaaatagaaaagaaaaatatat 269
Query: 481 agggtaggcaagacaaatgcgatgtgaaaacaagatgataaataaaatttctgaattata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agggtaggcaagacaaatgcgatgtgaaaacaagatgataaataaaatttctgaattata 209
Query: 541 atgtaaataaactgaatatttcaacaaagatttaacagtcccggagtgtgcattgtacac 600
|||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 208 atgtaaat-------------caacaaagatttaacagtcccggagtgtgcattgtacac 162
Query: 601 acacctcaaacaagaggtccagacag 626
||||||||||||||||||||||||||
Sbjct: 161 acacctcaaacaagaggtccagacag 136
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
