Query= MSMg01no116_e07.b1 MSMg01no116_e07.b1 CHROMAT_FILE:
MSMg01no116_e07.b1 PHD_FILE: MSMg01no116_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:28 2005
(549 letters)
>mm_chr1_133988629_133989577
Length = 949
Score = 609 bits (315), Expect = e-178
Identities = 321/323 (99%), Gaps = 1/323 (0%)
Strand = Plus / Minus
Query: 1 cataaattatttaaacatagtatacttagcggaatattgtgcttttaaatagtaactcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cataaattatttaaacatagtatacttagcggaatattgtgcttttaaatagtaactcag 264
Query: 61 gaagggctggagaggtggctcagcactgactccttgaagtggaaatttttggttgcatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gaagggctggagaggtggctcagcactgactccttgaagtggaaatttttggttgcatca 204
Query: 121 cgtgatgtttggctgaagcagacccgtgtgagaacacgtgatgtttagagagagtgtaag 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 203 cgtgatgtttggctgaagcagacccgtgtgagaacacatgatgtttagagagagtgtaag 144
Query: 181 taaggcccaacagatagtgacat-gcgcatacatagctagctgtgcaatgcttgttggtc 239
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 143 taaggcccaacagatagtgacatggcgcatacatagctagctgtgcaatgcttgttggtc 84
Query: 240 tcaggtctttactgatctttacttcatagagaggcacggcagagaccttcttctggtgtc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 tcaggtctttactgatctttacttcatagagaggcacggcagagaccttcttctggtgtc 24
Query: 300 ccagctggttctgatcgcttctg 322
|||||||||||||||||||||||
Sbjct: 23 ccagctggttctgatcgcttctg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no116_e07.g1 MSMg01no116_e07.g1 CHROMAT_FILE:
MSMg01no116_e07.g1 PHD_FILE: MSMg01no116_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:28 2005
(508 letters)
>mm_chr1_133857082_133857993
Length = 912
Score = 967 bits (500), Expect = 0.0
Identities = 508/512 (99%), Gaps = 4/512 (0%)
Strand = Plus / Plus
Query: 1 ctctgagctctgaagttacaatcacagctagatgacagactc---gtttctgcaggagac 57
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 ctctgagctctgaagttacaatcacagctagatgacagactcctcgtttctgcaggagac 260
Query: 58 tgtgactggggacttgggagaaaggaattaaactgagaa-ttaccttggtttctgtaagg 116
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 tgtgactggggacttgggagaaaggaattaaactgagaaattaccttggtttctgtaagg 320
Query: 117 tccggattgtcctaagcatttagaaacagttcctggcatactggttaactagtatctgca 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccggattgtcctaagcatttagaaacagttcctggcatactggttaactagtatctgca 380
Query: 177 gaaggggaagggattttagaacaggccccagcagtaaatgcttgggaagaaagtaccttt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaggggaagggattttagaacaggccccagcagtaaatgcttgggaagaaagtaccttt 440
Query: 237 tgttgttcagatggcaggtttctaggggatggtcttggatctctggagtccttcccccct 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttgttcagatggcaggtttctaggggatggtcttggatctctggagtccttcccccct 500
Query: 297 cttcactgtgtcttgtcacccagtagaatacatacagtcctctagcaaggaacaagaaaa 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttcactgtgtcttgtcacccagtagaatacatacagtcctctagcaaggaacaagaaaa 560
Query: 357 ggacaaccaagaggacactcagtcctctgaggtgggacaacactcttgctcccactgctc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggacaaccaagaggacactcagtcctctgaggtgggacaacactcttgctcccactgctc 620
Query: 417 tcacaagcctggaaaataccactgtccactctctaggctctgtaattttccacctgacct 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcacaagcctggaaaataccactgtccactctctaggctctgtaattttccacctgacct 680
Query: 477 ggcattccccatgactcctgcccctttttcct 508
||||||||||||||||||||||||||||||||
Sbjct: 681 ggcattccccatgactcctgcccctttttcct 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 912
Length adjustment: 10
Effective length of query: 498
Effective length of database: 902
Effective search space: 449196
Effective search space used: 449196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
