BAC Information

Click to search

BAC

Clone NameMSMg01-116G09
Chromosome1 (Build37)
Map Location 47,419,078 - 47,419,483
singlet/doubletsinglet
Overlap genenone
Upstream geneDnahc7b, LOC666855, Slc39a10
Downstream geneEG227061, LOC666869, LOC546734
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116G09.T7 (MSMg01no116_g09.b1)MSMg01-116G09.TJ (MSMg01no116_g09.g1)
ACCAG327789AG327790
length716718
length of high quality
(start - end)
515 (49 - 563)405 (82 - 486)
definitionCHROMAT_FILE: MSMg01no116_g09.b1 PHD_FILE: MSMg01no116_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:38 2005CHROMAT_FILE: MSMg01no116_g09.g1 PHD_FILE: MSMg01no116_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCCTTCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGAGGAT
CCGCGGAATTCTTTGTTTCCCTCTGTTCCTCATTTTTAATAGGGTTATTT
GGTTCTCTGGAATCTAACTTCTTGAGTTATTTGTATATATTGGATATTAG
CACTCTATCAGATGTAGGATTGGTAAAGATCTTTTCCCAATCTCTTGGTT
GCTGTTTTGTCTTATTGACAGTGTCCTTTGCGTTACAGAAGCTCACACAG
TAATAGTGGGAGAATTCAACACCCCACTCTCAACAACGGACAGATCATGG
AAAGAGAAACTAATCAGGGAAACTAACAGAAGTTATGAACCAAATGGACT
TAACAGATATCTATAGGACATTTCATCCTAAAACAAAAGACCTTCTTCTC
AGCACCTCATGGTACTGTCTCCAAAATTGACTATGTAATCCGTCACAAAA
CTGGCCTCAACAGATAAAAGAAAATTGAAAGGATCCCATGCGTCCTATGG
GATGCATAGGACCACATAGCACCACAGACTAAGGCCGGTCTTCAATAACA
ACAAAAACAACAGAAAGTCCACATGCACATGGAAGCTGAACAATGCTCTA
CTCGATGATAACTTGGTCAAGGAAGAAAGATAGATAGATATTAAAAACTT
TTTTTAGAATTTAATGAAAATGTGTTTAGCAAATTGAATCTTATATCTTG
GGTATCCTAGGCTTAG
TTTCCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTCCTTCTTTAGACTG
TAGAAGCCAGCCCCAATGTTTGACTTGTGTCTCTCACTCTACAGTTGTAA
AGCAATCAGAATTACTTCTCTCTTACCATAACTCCTCTTTCCTTTGCTGT
TAGTTCAATGTAACTTTTAGGACTCTGGACATGACAGGTAACCTAGAATC
AGGAATGTGATTCCATCTACAGATTTTGTATTCTGATTTTAGAATCTAGA
GATGGGTATGAGAAAATAATTTGGGAAGGCATTGTTGTCACATGCACATG
CATATCCACACAGAGACACACACAGATACACACACAGACATACATATACT
TTCTTTCTGTGTGTCTCTGTACCCTATGTGTGTGGAGAAATTTTAAAAGA
TATCACTACAGGATTGATGGGGGTGGTGAACAAATTAGGCAGATTTCTTT
ACATCTTGATTATCCCGACATGTTATAATCAGCCTAATCAAAATAAATGC
TATTTTGGATGCCAACTTCAAAATTGTATTTTGTTCCTCATTTACTGAGT
ATTACTGAACAAAATACCATCCATCACAGTTTATAACTTGGGCACTTAAA
AAGTCATTTATTTTAAAAGTTGATGAGGCCCTTGAATGAATATCTCAAGC
TCAGAGGTTTAAGAAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_g09.g1 MSMg01no116_g09.g1 CHROMAT_FILE:
MSMg01no116_g09.g1 PHD_FILE: MSMg01no116_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:39 2005
         (405 letters)



>mm_chr1_47418878_47419682
          Length = 805

 Score =  762 bits (394), Expect = 0.0
 Identities = 403/406 (99%), Gaps = 1/406 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttccttctttagactgtagaagccagccccaatgtttgacttgtgtctctcactcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttccttctttagactgtagaagccagccccaatgtttgacttgtgtctctcactcta 260

                                                                       
Query: 61  cagttgtaaagcaatcagaattacttctctcttaccataactcctctttcctttgctgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagttgtaaagcaatcagaattacttctctcttaccataactcctctttcctttgctgtt 320

                                                                       
Query: 121 agttcaatgtaacttttaggactctggacatgacaggtaacctagaatcaggaatgtgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttcaatgtaacttttaggactctggacatgacaggtaacctagaatcaggaatgtgat 380

                                                                       
Query: 181 tccatctacagattttgtattctgattttagaatctagagatgggtatgagaaaataatt 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccacctacagattttgtattctgattttagaatctagagatgggtatgagaaaataatt 440

                                                                       
Query: 241 tgggaaggcattgttgtcacatgcacatgcatatccacacagagacacacacagatacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggaaggcattgttgtcacatgcacatgcatatccacacagagacacacacagatacac 500

                                                                       
Query: 301 acacagacatacatatactttctttctgtgtgtctctgtaccctatgtgtgtggagaaat 360
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 acacagacatacatatactttctctctgtgtgtctctgtaccctatgtgtgtggagaaat 560

                                                         
Query: 361 tttaaaagatatcactacaggattgatggggg-tggtgaacaaatt 405
           |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 tttaaaagatatcactacaggattgatggggggtggtgaacaaatt 606


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)