Query= MSMg01no116_k02.b1 MSMg01no116_k02.b1 CHROMAT_FILE:
MSMg01no116_k02.b1 PHD_FILE: MSMg01no116_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:56 2005
(590 letters)
>mm_chr1_61931077_61932065
Length = 989
Score = 1035 bits (535), Expect = 0.0
Identities = 577/591 (97%), Gaps = 2/591 (0%)
Strand = Plus / Plus
Query: 1 ataaattatatacactcggttatggcaggaaaataacagcaagaggggctcgaggcagtt 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ataaattatatacactcagttatggcaggaaaataacagcaagaggggctcgaggcagtt 259
Query: 61 gatcatatcacacacacagtcaaaaaacagcaatggatgcttttgctcagctcaattcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gatcatatcacacacacagtcaaaaaacagcaatggatgcttttgctcagctcaattcca 319
Query: 121 ggaccccaggaccccggtactccagcccacagaagggtattgtccacagaacgtgggcct 180
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 320 ggaccccaggaccccagtactccagcccacagaagggtattgcccacagaacgtgggtct 379
Query: 181 tccacctcagttaacctaattaggaaaactccttatatgcattcacagat-ctaacctaa 239
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 380 tccacctcagttaacctaaataggaaaactccttatatgcattcacagaagctaacctaa 439
Query: 240 ccaagataccacctcttctgtgcctgggtgcttgtcttctgggttatttcaaatgctctt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ccaagataccacctcttctgtgcctgggtgcttgtcttctgggttatttcaaatgctctt 499
Query: 300 gagaatcagtgttaaccaccatacctgctttttcatattaatccatacactctatcccta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gagaatcagtgttaaccaccatacctgctttttcatattaatccatacactctatcccta 559
Query: 360 gctctgttttctgactaccatatctccttaaataaccccagtggtgaacgctgtaccagt 419
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 560 gctctgttttctgactaccatatctgcttaaataaccccagtggtgaatgctgtaccagt 619
Query: 420 ttcagctccccagatagtggccgctctacgccttgaccttttaaccaaagcacttctctc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttcagctccccagatagtggccgctctacgccttgaccttttaaccaaagcacttctctc 679
Query: 480 cacacatgtagcctggtagaccgttttcttttgtgttgcttttattgcttatatatttat 539
|||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 680 cacacaagtagcctggtagaccgttttcttttgtgttgctcttattgtttatatatttat 739
Query: 540 cagcattttttaatgtttgcccagatgatcttttatatttacaaccaaatg 590
|||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 740 cagcatttttta-tgtttgtccagatgatcttttatatttacaaccaaatg 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 989
Length adjustment: 10
Effective length of query: 580
Effective length of database: 979
Effective search space: 567820
Effective search space used: 567820
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no116_k02.g1 MSMg01no116_k02.g1 CHROMAT_FILE:
MSMg01no116_k02.g1 PHD_FILE: MSMg01no116_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:56 2005
(500 letters)
>mm_chr1_62041106_62042005
Length = 900
Score = 944 bits (488), Expect = 0.0
Identities = 497/500 (99%)
Strand = Plus / Minus
Query: 1 cttgtgtctgagtggagctaacctttcctctagcttctaattgccctccatctcctttgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 cttgtgtctgagtggagctaacctttcctctagcttctaattgccctccatctcctttgc 641
Query: 61 tggtgatgatgtggctagccctgctgggatagctgttgacttagggaacatctaaatgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tggtgatgatgtggctagccctgctgggatagctgttgacttagggaacatctaaatgtc 581
Query: 121 acgatttgtaattatgattgtgggtgtatcaagctcacattgaatgaggcctcactaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 acgatttgtaattatgattgtgggtgtatcaagctcacattgaatgaggcctcactaatt 521
Query: 181 ggggctgcagacgaggctggagccctgcctctttcttggtcacaggtggtttgttatccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ggggctgcagacgaggctggagccctgcctctttcttggtcacaggtggtttgttatccc 461
Query: 241 taacagtagttgcatattaggttctgtctctacttgcacaatggtagtctttgaaaggta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 taacagtagttgcatattaggttctgtctctacttgcacaatggtagtctttgaaaggta 401
Query: 301 gtagtaaattagaagcttcaaaagtatattgtataggcatagaaatcatgattcagttct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gtagtaaattagaagcttcaaaagtatattgtataggcatagaaatcatgattcagttct 341
Query: 361 aaaactgaaatgtactgtctatacttatggcaaataaaggaacagctcagatgctaggtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aaaactgaaatgtactgtctatacttatggcaaataaaggaacagctcagatgctaggtc 281
Query: 421 tggagccttggagccaggctgcagcatcacaggtagtgatgactttctaacatcagtcct 480
|||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct: 280 tggagccttggagccaggctgcagtatcactggtagtgatgacttcctaacatcagtcct 221
Query: 481 catagtcatattttcagacc 500
||||||||||||||||||||
Sbjct: 220 catagtcatattttcagacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
