TTTCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAAGACTGGACCTCAAGCAGGTCAGGAAGCAGGAACTGATT
GGCACAGAGGCCATGGAGGGATGTTACTTACTGGCTTGCTCAGCTTTCTT
TCTTATAGAACCCAAAGCTATCAGCCCAGGGATGGTACCACCCACAAGGG
GCCCTCCCCCCTTGATCACTAATTGAGAAAATGCCTTACAGCTGGATCTC
ATGGAGGCATTTCCTCAACTGAAGCTCCTTTCTCTGTGATAACTCCAGCT
TGTGTCAAGTTGACACACAAAACCAACCAGTAAAGTGAATTTTAAGCAAT
TACTGATAAAAAATATTCAATTATTATTGAAAGCTCACCAACTATGGATT
TAAAAAAAAATCTTACACTAAGGTATTAAAGAAAATAAAAGGACAGCTAA
GTGAAACTTTATGAACATTTTTGAAACTTTATCATTAAGGATAAAGTAGG
TAGAAAATAAAACACAGTATAACAAAAACAAAACCCAGACTTCTCAGTCA
GCAAGGTATGTGCTGTGCAGGCACCAGGACCTGAGCTCAGATCCTAGGCG
CCCAAGTACAAGCACTGTTCTGCGGAGACAGGCAGAGTCAGAGCTTGCTG
GGTTCACTCTAGCTAACTCCTGAGTTCAGTGTAAAACCTTGCCTTGAACA
GTAAGTAGACAGTGATAACC

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACAGGAAGACCAAAAGAGTCAACT
AACCTGAGCCCTTGGGGCTCTCAGAGACTGAACCACTGACCAAAGAACAT
ACCTGAGCTGGACCTACCACCCCCAATCCTACACACAAACATATGTAGGA
AATGTACAGCTAGGTCTTCATATGGGTCCCGAACAACTGGAGCAGGGACT
ATCCTAAAAATCTGTTGCCTGTCTGTGGGATATGTTCTTCTAGCTGGGTT
GCCTTGTCTGTCCTCAGTGGGTGAGGATGGGCCTAGCCCTGTAGAGAATT
GATGTGCCAGGGTGGGAGGACACCCAGGGGGACCTCCACCCTCTTGGAGG
AGAAGGAGGGAGGATATTGTGGGAGGGGTGACTGGTAATGTTTTCCTTCA
CCTTTCCATTCCCCTCCAACTTTCCTCCTTACCCGCTTTTCTTCTAATCT
TATCTCTTCTCTCCCCTCTTTCCCCCTCTCCTCTTCCCTTCCCCATCCAC
TTACACTTTCTCATTTCCCACATTATCTCCTATACCCTTCCCCCTCCCCC
CTTCCCTCTTTCCATTTCCCCCCTTTTCTTTCCTTCCTATTATACTTACT
TCATATCCCTCCACTTCTTCTTCTCACACTATTTAACATATCAAATTTAC
TCCTTTTCTCCTCCTTCCCCCTTTCTCC

Query= MSMg01no116_m04.b1 MSMg01no116_m04.b1 CHROMAT_FILE:
MSMg01no116_m04.b1 PHD_FILE: MSMg01no116_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:06 2005
         (627 letters)



>mm_chr1_141379202_141380230
          Length = 1029

 Score = 1166 bits (603), Expect = 0.0
 Identities = 619/625 (99%), Gaps = 2/625 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagactggacctcaagcaggtcaggaagcaggaactgattggcacagaggccat 64
           ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 972 gaattcaagactggaactcaagcaggtcaggaagcaggaactgattgacacagaggccat 913

                                                                       
Query: 65  ggagggatgttacttactggcttgctcagctttctttcttatagaacccaaagctatcag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 912 ggagggatgttacttactggcttgctcagctttctttcttatagaacccaaggctatcag 853

                                                                       
Query: 125 cccagggatggtaccacccacaaggggccctccccccttgatcactaattgagaaaatgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 cccagggatggtaccacccacaaggggccctccccccttgatcactaattgagaaaatgc 793

                                                                       
Query: 185 cttacagctggatctcatggaggcatttcctcaactgaagctcctttctctgtgataact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 cttacagctggatctcatggaggcatttcctcaactgaagctcctttctctgtgataact 733

                                                                       
Query: 245 ccagcttgtgtcaagttgacacacaaaaccaaccagtaaagtgaattttaagcaattact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ccagcttgtgtcaagttgacacacaaaaccaaccagtaaagtgaattttaagcaattact 673

                                                                       
Query: 305 gataaaaaatattcaattattattgaaagctcaccaactatggattt--aaaaaaaaatc 362
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 672 gataaaaaatattcaattattattgaaagctcaccaactatggatttaaaaaaaaaaatc 613

                                                                       
Query: 363 ttacactaaggtattaaagaaaataaaaggacagctaagtgaaactttatgaacattttt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ttacactaaggtattaaagaaaataaaaggacagctaagtgaaactttatgaacattttt 553

                                                                       
Query: 423 gaaactttatcattaaggataaagtaggtagaaaataaaacacagtataacaaaaacaaa 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 552 gaaactttatcattaaggataaagtaggtagaaaataaaacacagtataacaataacaaa 493

                                                                       
Query: 483 acccagacttctcagtcagcaaggtatgtgctgtgcaggcaccaggacctgagctcagat 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 acccagacttctcagtcagcaaggtatgtgctgtgcaggcaccaggacctgagctcagat 433

                                                                       
Query: 543 cctaggcgcccaagtacaagcactgttctgcggagacaggcagagtcagagcttgctggg 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cctaggcgcccaagtacaagcactgttctgcggagacaggcagagtcagagcttgctggg 373

                                    
Query: 603 ttcactctagctaactcctgagttc 627
           |||||||||||||||||||||||||
Sbjct: 372 ttcactctagctaactcctgagttc 348


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1029
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1019
Effective search space:   628723
Effective search space used:   628723
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)