Query= MSMg01no116_p01.b1 MSMg01no116_p01.b1 CHROMAT_FILE:
MSMg01no116_p01.b1 PHD_FILE: MSMg01no116_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:20 2005
(566 letters)
>mm_chr1_139770503_139771469
Length = 967
Score = 934 bits (483), Expect = 0.0
Identities = 498/503 (99%), Gaps = 1/503 (0%)
Strand = Plus / Minus
Query: 6 gaattcctggttcc-cagagtagaattctctgttcaaagagaccaagacataggagtctt 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gaattcctggttccacagagtagaattctctgttcaaagagaccaagacataggagtctt 453
Query: 65 aagagatagaaatgagttatggacacagtgttttaacttcaagctggtagtgactgttgc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aagagatagaaatgagttatggacacagtgttttaacttcaagctggtagtgactgttgc 393
Query: 125 ttattttgctattatggagagtgaactttaacatgcactaaaaaggacttaagaaccagt 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 392 ttattttgctattatggagagtgaactttaacatgcactaaaaaggacttaagaaccaat 333
Query: 185 tatgaattgaggcataagtgaggatcttggggtaccagaaacaaaagtggacagagagaa 244
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 332 tatgaattgaggcataagtgaggatcttggggtacaagaaacaaaagtggacagagagaa 273
Query: 245 tgaaagccccctctaagtgctgctaatgattattttcagaactaagtacttgctgctgtt 304
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 272 tgaaagccccctctaagtgctgctaataattattttcagaactaagtacttgctgctgtt 213
Query: 305 gttctaatcttctctcatacataacatcctgaccacagtttcccctccctccattcttcc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gttctaatcttctctcatacataacatcctgaccacagtttcccctccctccattcttcc 153
Query: 365 caccaccccagatccactcttttgctatttccctccccctccccacacacacaaggtggc 424
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 152 caccaccccagatccactcttttgctatttccctccccctccccccacacacaaggtggc 93
Query: 425 atctcagaaaaatcaactgaacacagaataacaaatcacaagactaggcacaagccctca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 atctcagaaaaatcaactgaacacagaataacaaatcacaagactaggcacaagccctca 33
Query: 485 tgtcaaggctagactatcccata 507
|||||||||||||||||||||||
Sbjct: 32 tgtcaaggctagactatcccata 10
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 967
Length adjustment: 10
Effective length of query: 556
Effective length of database: 957
Effective search space: 532092
Effective search space used: 532092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no116_p01.g1 MSMg01no116_p01.g1 CHROMAT_FILE:
MSMg01no116_p01.g1 PHD_FILE: MSMg01no116_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:20 2005
(544 letters)
>mm_chr1_139648140_139649083
Length = 944
Score = 1013 bits (524), Expect = 0.0
Identities = 539/544 (99%)
Strand = Plus / Plus
Query: 1 actaatagacagtttctgtctcactttaccactcaactggagtactgctgcgaaccgacg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actaatagacagtttctgtctcactttaccactcaactggagtactgctgcgaaccgaca 260
Query: 61 gtgtggaggcctgggggcagtggagaacaatggaaagcagaacagcagctggcatgacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtggaggcctgggggcagtggagaacaatggaaagcagaacagcagctggcatgacct 320
Query: 121 tgtgatctgggatggtgcaacagagggtcatagagagtttctctatgattgcagcaacag 180
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 tgtgatccgggatggtgcaacagagggtcatagagagcttctctatgattgcagcaacag 380
Query: 181 aagaccagagagagaaagggagagagggagtgccgagagccacaggacagggagggagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagaccagagagagaaagggagagagggagtgccgagagccacaggacagggagggagag 440
Query: 241 ggagatatgaaagaatggattaacacttatatctaaagccataaagtagctgaatatata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagatatgaaagaatggattaacacttatatctaaagccataaagtagctgaatatata 500
Query: 301 tgtcattagcttccaattctgactatcggctgtctacaagaaagtaaaaaaaaaataaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtcattagcttccaattctgactatcggctgtctacaagaaagtaaaaaaaaaataaaa 560
Query: 361 gaaagattaaagtgatgaaataattaataagggacgtaataatctcaaacagacacacac 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaagattaaagggatgaaataattaataagggacgtaataatctcaaacagacacacac 620
Query: 421 ctagcaccaagccaccaaaaataactaaagcaaacagtagcagagatagctgttagtcgg 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 621 ctagcaccaagccaccaaaaataactaaagcaaacagtagcagagatagctgctagtcgg 680
Query: 481 ggagagccagacaggaatgcagtgataacagagaacttcagttctttacttctgataatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggagagccagacaggaatgcagtgataacagagaacttcagttctttacttctgataatg 740
Query: 541 gata 544
||||
Sbjct: 741 gata 744
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
