Query= MSMg01no116_p16.b1 MSMg01no116_p16.b1 CHROMAT_FILE:
MSMg01no116_p16.b1 PHD_FILE: MSMg01no116_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:23 2005
(629 letters)
>mm_chr1_187442890_187443912
Length = 1023
Score = 1054 bits (545), Expect = 0.0
Identities = 606/633 (95%), Gaps = 13/633 (2%)
Strand = Plus / Minus
Query: 4 ggaattcctacatcattccgggcaatcaaaacaatctcctatagacatccccataagcca 63
|||||||| |||||| || |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 789 ggaattcccacatcagtcagggcaatcaagacaatctcctatagacatccccataagcca 730
Query: 64 agctcatctaaacactcccctactgaaactcactctcaaactgaacatcacaggtctttc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 agctcatctaaacactcccctactgaaactcactctcaaactgaacatcacaggtctttc 670
Query: 124 tcccaagttctaaacttagtccagtctcctatttacttccacctatggcacgattatctt 183
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tcccaagttctaagcttagtccagtctcctatttacttccacctatggcacgattatctt 610
Query: 184 tgatttactgatatcttgcttccctaggcaataaaaatatatgctccctaactgccattt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tgatttactgatatcttgcttccctaggcaataaaaatatatgctccctaactgccattt 550
Query: 244 ataaggattgagtaaattcactcagtagaggatgcttctccttccttcttcccaacactt 303
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 549 ataaggattgagtaaattcactcagtagaggatgtttctccttccttcttcccaacactt 490
Query: 304 ccattatagtgttatgccctggcttccatgattataaggagtccctgtgtcatttccaac 363
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ccattatagcgttatgccctggcttccatgattataaggagtccctgtgtcatttccaac 430
Query: 364 gcaaaagcaaagcaacatttagaaagttcaagtccattctcagtgtctacttaggggaca 423
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tcgaaagcaaagcaacatttagaaagttcaagtccattctcagtgtctacttaggggaca 370
Query: 424 tggattacaataagctgtgcataaacttgtatcacagtatgtatgagtatgtcactctca 483
||||||||||||||||||||||||||||||||||| ||||| | ||| ||||||||
Sbjct: 369 tggattacaataagctgtgcataaacttgtatcacggtatgca--agt----cactctca 316
Query: 484 gacaatgctgtggtaaccatcgcagagacaaagaacattgctccgtcacacggtcatcct 543
||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 315 gacaatgctatggtaaccatcacagagacaaagaacattgctccgtcacaccgtcatcct 256
Query: 544 ttctgcacacatcctgcccactcctttcacaatgcagaacactgacaaccga-------g 596
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 255 ttctgcacacatcctgcccactcctttcacaatgcagaacactgacaaccgacaaccgag 196
Query: 597 tgcactggggcatgagtgttccacgccatcttc 629
|||||||||||||||||||||||||||||||||
Sbjct: 195 tgcactggggcatgagtgttccacgccatcttc 163
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1023
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1013
Effective search space: 627047
Effective search space used: 627047
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no116_p16.g1 MSMg01no116_p16.g1 CHROMAT_FILE:
MSMg01no116_p16.g1 PHD_FILE: MSMg01no116_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:23 2005
(518 letters)
>mm_chr1_187322108_187323025
Length = 918
Score = 969 bits (501), Expect = 0.0
Identities = 513/517 (99%)
Strand = Plus / Plus
Query: 2 acagttcagaacagattcgggagataacaccaagcaaactgcttagtgttctgtttggaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 acagttcagaacagattcgggagataacaccaagcaaactgcttagtgttctgtttggaa 261
Query: 62 tttatgatttaaatgctgagagactgatgtctgggtgcgtgacatccacccacactgtaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tttatgatttaaatgctgagagactgatgtctgggtgcgtgacatccacccacactgtaa 321
Query: 122 ccctcccttcacaggaaggagtggaggagaaatagacatatagatacagacagaaaagtg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ccctcccttcacaggaaggagtggaggagaaatagacatatagatacagacagaaaagtg 381
Query: 182 agagatgaagaagctccaagggcaccaaggccacgagtgaactttgtgtggactatcact 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agagatgaagaagctccaagggcaccaaggccacgagtgaactttgtgtggactatcact 441
Query: 242 taggctatcatttggctttttgttttagtcacaagtcagctagataaccagggctcttca 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 taggctatcatttggctttttgttttagtcacaagtcagctagataaccagggctcttca 501
Query: 302 gccactctactaatgactcgtgttagtttgattctaagaggagtaaacacccgccatgtg 361
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gctgctctactaatgactcgtgttagtttgattctaagaggagtaaacacccgccatgtg 561
Query: 362 acacgcggggattctgaatgttcaactctcttgatgtttcagactggagaaaatactatc 421
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 562 acacgcgggaattctgaatgttcaactctcttgatgtttcagactggagaaaatcctatc 621
Query: 422 cggttttaactagttcctgaaaaaagtggtgtttggattatagaatttaattcaaattga 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 cggttttaactagttcctgaaaaaagtggtgtttggattatagaatttaattcaaattga 681
Query: 482 tatgttattaagatttcaaaaataataaatatataag 518
|||||||||||||||||||||||||||||||||||||
Sbjct: 682 tatgttattaagatttcaaaaataataaatatataag 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
