BAC Information

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BAC

Clone NameMSMg01-117I16
Chromosome1 (Build37)
Map Location 48,848,392 - 48,848,578
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546734, LOC674566, LOC100041936, LOC666903
Downstream geneLOC666909, 2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117I16.T7 (MSMg01no117_i16.b1)MSMg01-117I16.TJ (MSMg01no117_i16.g1)
ACCAG328648AG328649
length723716
length of high quality
(start - end)
533 (47 - 579)590 (75 - 664)
definitionCHROMAT_FILE: MSMg01no117_i16.b1 PHD_FILE: MSMg01no117_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:08 2005CHROMAT_FILE: MSMg01no117_i16.g1 PHD_FILE: MSMg01no117_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCG
GAATTCATTCATTTTCCAAATATACTGTACCATAGCATAAATGAAACAAA
AACAAAATGAAAACAAAGGTAAATTTTTCTCAGATTTATTATGTCATGTA
ATAAATTATAAGTAAATTCTTTACTTTTATGTTTTGATCCATGATGGCAA
TCACTCAACTTATATTTCTGTTATATAATATAATATAATATAATATAACA
TGATTTTTACTTTTACATGGATGGGGGTAGTTAGGGGTATAGAAGAAGAG
GTAGAGCAGAAGGCACTGGGATAATAGGATGGAAGGGAAACTGAGGCTGA
GCTATAAAAAGAATAAAAATTCATTTTACTTTAAATAAAATAAAAAGTCT
CATAATTTATTGCCAGATTAGAAATAGCATTTACCATTATAGCTTTGTTG
CTTATCGGTTTCATATTCTTGCTTCATATTAGAAGTTAAATACCAACAGA
TTAACCACATACTTTTCCTTATATTCAGTAGAAGTTCACTAGGCTTCAGT
GCATACATCTAAAGTTCTTATTTTCTAAGCAAAGACTCTGAGTTTATTGC
TTAGCTTAATATTTGTGAAAGGTTACCTGGCTTATAACACTTTCACACAG
CTTGGCTACATGAATGTATGCTGCAGAGGATTATTCTGTACATACCGAAT
AATGTCCCTTTTACCATACCTGA
CCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTT
TAGTGGGGTTGTTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATAT
ATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTC
CCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGC
AGAAACTTTGGAGTTTCATTAGGTCCCACTTGTCAATTCTCGATCTTACA
GCACAAGCCATCGATGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATAGG
ATACCCAAGATATAAGATACAATTTGCTAAACACATGAAACTCAAGAAGA
ATGAAGACTGAAGTGTGAACACTATGCCCCTCCTTAGAATTGGGAACAAA
ACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGATGAAAGG
ATGGACCATGTAGAGACTGCCATATCCAGGGATCCACCCCATAATCAGCA
TCCAAACGCTGACACCATTGCATATACTAGCAAGATTTTATCGAAAGGAC
CCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCATACACAG
AAGTGGATGCTCACAGTCAGCTACTGCATGGATCACAGGGCTCCCAATGG
AGGAGCTAGAGAAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_i16.b1 MSMg01no117_i16.b1 CHROMAT_FILE:
MSMg01no117_i16.b1 PHD_FILE: MSMg01no117_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:08 2005
         (533 letters)



>mm_chr1_48848021_48848953
          Length = 933

 Score =  346 bits (179), Expect = 2e-99
 Identities = 185/187 (98%)
 Strand = Plus / Plus

                                                                       
Query: 347 aaaagtctcataatttattgccagattagaaatagcatttaccattatagctttgttgct 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aaaagtctcataatttattgccagattagaaatagcatttaccattatagctttgttgct 431

                                                                       
Query: 407 tatcggtttcatattcttgcttcatattagaagttaaataccaacagattaaccacatac 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tatcggtttcatattcttgcttcatattagaagttaaataccaacagattaaccacatac 491

                                                                       
Query: 467 ttttccttatattcagtagaagttcactaggcttcagtgcatacatctaaagttcttatt 526
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 492 ttttccttatattcagtagaagttcactaggcttcagtgcatatatctaaagttcttatt 551

                  
Query: 527 ttctaag 533
           | |||||
Sbjct: 552 tcctaag 558


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)