TCAAAATTTGCGGCGCTAAACGACTCCTATTTCGAGAGAATCCGCGGAAT
TCAATCCCATTCCCCCACATACAAATATAGAAAATTGACTTCTTGAAAGT
TGTCTTCTTTGTAACATTTACCTAAGCACAATGTCACACATAAGCCATGC
ATATACATATGCATCAGAACCAAAATGGATAAGTAGATAAGTAAACAAAT
GTCATAGAATACTTGGTAGAGTCCATTTGTGCCCAGTGGTTCCCTGTATC
CTATGTCAGTGTTGGCCACAACACAGAAAGCCAATGCCTTTGATCTTGCA
TAATGTCACCACTGTATTGCTCAATAAAATCTTATTAAGAGTTCACATTT
ATAACTCACACATTCATCAACATTATAATCTTCCTTTCATTTATATAGTG
TTTTCATGTATGTTGATGCTTAGACTTGATAAAGAAATAAAACTTAGTTT
TGAATATTAGTCCCCTATCTAATTTAGGATTGGTAAAGATCCTTTCCCAA
TCTGTTCCTGGCCTTTTTGTCTTATTGACAGTGTCTTTTGCCTTACAGAA
GCTTTGCAATTTTATGAGGTCCCATTTGTTGATTCTTGATCTTATAGCAC
AAGCCTATTCAGGAATTTTTCCCCTGTGCCCATATCTTTGAGGCTTTTCC
CCACTTTCTCCTCTATAAGTTTCACTGCCTCTGGTTTTATGTGGAGGC

TTTTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATGATTTAATGTTTTGGATGAG
TTAGCAATAACCCAATGAGTAAATCCACCCTTCTTTCATTATCTATTCAT
TAGCTCATGGACATCTAAACTGCATCTAGATTTTGGTTATGGTAAATAGA
AAAGAAGTGACCATGGATAGATATGTGTCTCTGGAGTAGGATGTAGAGTC
TGCTAAGTATGTTACCAGAAGTAGTGTTCTAGAATCTTATGGTAGGTCAT
TTTTTATCATTTTGAGGAAACTTCAAACTAATTTCCATAATGGTGCTACC
ATTTAGACTTCTACCAGCAGTGAAGAGTGTTCCTTTCCCCCATATCTGTA
GTAGCATTTGTTGTCATTGTGTGGTTGGATTTTAGTTTGTTTATATTGTT
TTGTCTTGGTTCAGTTTTGTTTTGGTTTTGATTTCTTTTGTATTTGCTGC
TGTTGTTTTATCTTAGTCATTCTGATTGGGGAGAGTTCAAACTACAGAGT
ATTTTAATTTTCATTTTCCTGATTGCTAAGCATATGGAACATGCAATAAA
CTGGTTTTTGTGTATTTCATCTTTTGAAAGTAATCTGTTAAATCCCACGT
TCGTTCTTAANATGTGCTATGTAGTTGCTTCTATATGTGCATTTTGCT

Query= MSMg01no117_j04.b1 MSMg01no117_j04.b1 CHROMAT_FILE:
MSMg01no117_j04.b1 PHD_FILE: MSMg01no117_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:10 2005
         (643 letters)



>mm_chr1_125616663_125617704
          Length = 1042

 Score = 1104 bits (571), Expect = 0.0
 Identities = 622/643 (96%), Gaps = 10/643 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatccc----attcccccacatacaaatatagaaaattgacttcttgaaagttg 60
           ||||||||||||    |    |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatcccaggaa----cccacatacaaatatagaaaattgacttcttgaaagttg 260

                                                                       
Query: 61  tcttctttgtaacatttacctaagcacaatgtcacacataagccatgcatatacatatgc 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttctttgtaacatttacctatgcacaatgtcacacataagccatgcatatacatatgc 320

                                                                       
Query: 121 atcagaaccaaaatggataagtagataagtaaacaaatgtcatagaatacttggtagagt 180
           |||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atca-aaccaaaatgtataaatagataagtaaacaaatgtcatagaatacttggtagagt 379

                                                                       
Query: 181 ccatttgtgcccagtggttccctgtatcctatgtcagtgttggccacaacacagaaagcc 240
           ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 380 ccatttgtgcccagtggttccctgtatcctatgccagtgttggccacaacactgaaagcc 439

                                                                       
Query: 241 aatgcctttgatcttgcataatgtcaccactgtattgctcaataaaatcttattaagagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aatgcctttgatcttgcataatgtcaccactgtattgctcaataaaatcttattaagagt 499

                                                                       
Query: 301 tcacatttataactcacacattcatcaacattataatcttcctttcatttatatagtgtt 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 500 tcacatttataactcacacattcatcaacattataatcttcctctcatttatatagtgtt 559

                                                                       
Query: 361 ttcatgtatgttgatgcttagacttgataaagaaataaaacttagttttgaatattagtc 420
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttcatgtatgttgatgtttagacttgataaagaaataaaacttagttttgaatattagtc 619

                                                                       
Query: 421 ccctatctaatttaggattggtaaagatcctttcccaatctgttcctggcctttttgtct 480
           || ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 620 cc-tatctgatttaggattggtaaagatcctttcccaatctgttcgtggcctttttgtct 678

                                                                       
Query: 481 tattgacagtgtcttttgccttacagaagctttgcaattttatgaggtcccatttgttga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tattgacagtgtcttttgccttacagaagctttgcaattttatgaggtcccatttgttga 738

                                                                       
Query: 541 ttcttgatcttatagcacaagcctattcaggaatttttcccctgtgcccatatctttgag 600
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 739 ttcttgatcttatagcacaaacctattcaggaatttttcccctgtgcccatatcttcgag 798

                                                      
Query: 601 gcttttccccactttctcctctataagtttcactgcctctggt 643
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gcttttccccactttctcctctataagtttcactgcctctggt 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1042
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1032
Effective search space:   653256
Effective search space used:   653256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)