Query= MSMg01no117_j13.b1 MSMg01no117_j13.b1 CHROMAT_FILE:
MSMg01no117_j13.b1 PHD_FILE: MSMg01no117_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:12 2005
(561 letters)
>mm_chr1_167977825_167978785
Length = 961
Score = 1031 bits (533), Expect = 0.0
Identities = 554/567 (97%), Gaps = 12/567 (2%)
Strand = Plus / Plus
Query: 1 ctgctacttccgtgacaggggaaacagaaggcgattagattagacgcagcttcaggaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgctacttccgtgacaggggaaacagaaggcgattagattagacgcagcttcaggaagc 260
Query: 61 acgctacactttatacggcgaggtaaaagtggttctgcgcaattgtactgcttttcttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acgctacactttatacggcgaggtaaaagtggttctgcgcaattgtactgcttttcttta 320
Query: 121 atgtcatgccaggactcaagatccttacaggaaaaactcctatggggtcgcgggaggggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtcatgccaggactcaagatccttacaggaaaaactcctatggggtcgcgggaggggg 380
Query: 181 agactgagacgcagctcagtagtagactacgtggtcggcgtgaacagagccctggctacg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agactgagacgcagctcagtagtagactacgtggtcggcgtgaacagagccctggctacg 440
Query: 241 atccccacgga----tttttttaa--caagcaagcaagcaaacaaaaaagttttccactc 294
||||||||||| | || ||||||||||||||||||||||||||||||||||
Sbjct: 441 atccccacggaagaat------aaaacaagcaagcaagcaaacaaaaaagttttccactc 494
Query: 295 ataagtacaaagatcagcatggctacacgcattaaaacctcccgtgtctttaaaggcaca 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ataagtacaaagatcagcatggctacacgcattaaaacctcccgtgtctttaaaggcaca 554
Query: 355 gttggtaatgaaggtaggcaatgtctcacgtgttgtgtctcctccatccccttgtcgccc 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gttggtaatgaaggtaggcaatgtctcacgtgttgtgtctcctccatccccttgtcgccc 614
Query: 415 ctccccgccccccagctcaccactgatctagtgtttactctgtcacaccgggagggagct 474
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 615 ctccccgccccccagctcaccactgatctagtgtttactctgtcacaccgagagggagct 674
Query: 475 aattcttgcttgcatctctcagttatgtcctctgtggagcacttcctggctccatttcta 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 aattcttgcttgcatctctcagttatgtcctctgtggagcacttcctggctccatttcta 734
Query: 535 tttgatttcttgcttgagtgtaagttg 561
|||||||||||||||||||||||||||
Sbjct: 735 tttgatttcttgcttgagtgtaagttg 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no117_j13.g1 MSMg01no117_j13.g1 CHROMAT_FILE:
MSMg01no117_j13.g1 PHD_FILE: MSMg01no117_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:12 2005
(498 letters)
>mm_chr1_168079413_168080314
Length = 902
Score = 888 bits (459), Expect = 0.0
Identities = 490/503 (97%), Gaps = 6/503 (1%)
Strand = Plus / Minus
Query: 1 ttccttttgaggacagaactaggaggggctttcagctggtaatatgtctggggatgaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttccttttgaggacagaactaggaggggctttcagctggtaatatgtctggggatgaaag 502
Query: 61 tttagaagccaatggcatacatgtatgttttcacagagatgtgggctaggcatggctcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttagaagccaatggcatacatgtatgttttcacagagatgtgggctaggcatggctcaa 442
Query: 121 agcaaatgtcaggtacccaagttatacaaaggttccagtgaaggtcagag-----agaca 175
|||||||| |||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 441 agcaaatgccaggtacccaagttattcaaaggttccagtgaaggtcagagagacaagaca 382
Query: 176 agacaagacaagataaggtccccaaaagccaagaagggctctgagaaggggaagtagttg 235
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agacaagacaagacaaggtccccaaaagccaagaagggctctgagaaggggaagtagttg 322
Query: 236 ctagcgggggaaatgctggtgatttcaagagtgttaggagagaaaatgggtgagatgggc 295
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctagc-ggggaaatgctggtgatttcaagagtgttaggagagaaaatgggtgagatgggc 263
Query: 296 agagacgagaacgtggagaccctgtgccaggtcagaatcctgagctctcagggcctggcc 355
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 262 agagacgagaacgtggagacgctgtgccaggtcagaatcctgagctcacagggcctggcc 203
Query: 356 agtgtgggttgccctggggatgtttgtattttgatgatgttaattctgcttccgcaagaa 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 agtgtgggttgccctggggatgtttgtattttgatgatgttaattctgcttccgcaagaa 143
Query: 416 gggctacccctggtgagatcacatactcaggtgatctcactgaccctttctaactgggca 475
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 aggctgcccctggtgagatcacatactcaggtgatctcactgaccctttctaactgggca 83
Query: 476 aacaaaggctagagccgatgatt 498
|||||||||||||||||||||||
Sbjct: 82 aacaaaggctagagccgatgatt 60
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 902
Length adjustment: 10
Effective length of query: 488
Effective length of database: 892
Effective search space: 435296
Effective search space used: 435296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
