TAAATTTGCGGCGCTATACGACTCCTATTTCGAGAGGAGCGCGGAATTCC
TGAGTTCCCCGTGGAGCACATGGGAAGGTGATATCTTCCAGAAGCAGGGC
ACAGTGAGAAAGTCTACACACATCTTTTGGATCTGTGACCTCTGATGAAT
CCATAAGATACCTGAAGGACTACTCACTTTACAAGTAAAAACTTAATGAC
ACAATTGAGCTTATGCAAATACAAAACTAAAAAATGAGATAGGACAGGGT
AGAAATTATCACAGTCTCTGTTTGAATACAAAACAGTTGAGAAACTGTAC
CATCTTAGGATGAGAATATACATACAAAATTTATAAGTAAGTAATTCTAA
ATTCAGCAACATTTTACAAGTTTTATAAACATTTCGTAGAATTTTATCTG
CTCTGAATCCTCTGTTTTGATAAAGCATACACCATATTTATAGATGTTAG
TTATTATGTAAAAATGAAGTGATCCATAAAAAACAATTATGCTGTAGTCA
GTTATTGCTTAACTAGAAAATTATGTGTCAAGCTGCCTCGTGACATTATT
GAAAAAATATATTCAGGTAACTTACCAGATATTTAATGACACACATGTAG
TAAAAGCCTATTGAGTGGCTTTGCAGTTTTTGATGGAGTGGACCAACTGC
CCAACAACCAGGAATCTTGGTGAGTGTATTATGTATAGCACAGAGGGT

CTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTTGCAGCAGTGATGTGGAAGTAG
ATGAAGAGGCACATAAATGATGTCCCTCCTAGATATGCTACATATAGGCA
TAAGAGAGATGAACACAGTCTAAATGCCCTCCCCACACATCATGAAAAAT
GCAGCAAGTCAGTCAGTATTAAGCAAGCTCCTCCTGAAAGCCAGTGAACC
ATATCCTGAACTTTTCCAAAAACAAATACAGTGTGTACATAGAGGTGTGA
TGCTTGCTCTTCTACACTGGGCTCCTGATGAGTGCACCAGAATGAGAGAA
CTGTCTTAGAAACACTTGAGAAATCTAAAGCATCACCAATAGGACACTAT
CCTAACTTTACCTCCAAAGTAGTCATTGCTTCAATGGGGAATTAGCATTG
AAGAAACTGGAGAAGTGTTATCAACTGTGTGTAGAACTTGTACTAGCATG
TCTTAGACCATTACTCTAGTGTGATCTAATCCAGCTTCCTTAAATAGCCC
AGGGTTCTTTTTCTCTTAGCCTTCAGTTCCACTGTGGACAGTATCATTTA
ATCAATGTGTATCACATATATAGAGATCACAGGTGATCTTGGCCTAGACT
TTTCCCTGGTGTAGAGGGCGTTCTCTTAAACAGGACAGGACACACTTCTG
G

Query= MSMg01no118_a17.b1 MSMg01no118_a17.b1 CHROMAT_FILE:
MSMg01no118_a17.b1 PHD_FILE: MSMg01no118_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:46 2005
         (658 letters)



>mm_chr1_41779117_41780174
          Length = 1058

 Score = 1241 bits (642), Expect = 0.0
 Identities = 651/654 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcctgagttccccgtggagcacatgggaaggtgatatcttccagaagcagggcaca 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcctgagttcccagtggagcacatgggaaggtgatatcttccagaagcagggcaca 263

                                                                       
Query: 64  gtgagaaagtctacacacatcttttggatctgtgacctctgatgaatccataagatacct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtgagaaagtctacacacatcttttggatctgtgacctctgatgaatccataagatacct 323

                                                                       
Query: 124 gaaggactactcactttacaagtaaaaacttaatgacacaattgagcttatgcaaataca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaaggactactcactttacaagtaaaaacttaatgacacaattgagcttatgcaaataca 383

                                                                       
Query: 184 aaactaaaaaatgagataggacagggtagaaattatcacagtctctgtttgaatacaaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaactaaaaaatgagataggacagggtagaaattatcacagtctctgtttgaatacaaaa 443

                                                                       
Query: 244 cagttgagaaactgtaccatcttaggatgagaatatacatacaaaatttataagtaagta 303
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cagttgagaaactgtaccaccttaggatgagaatatacatacaaaatttataagtaagta 503

                                                                       
Query: 304 attctaaattcagcaacattttacaagttttataaacatttcgtagaattttatctgctc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 attctaaattcagcaacattttacaagttttataaacatttcgtagaattttatctgctc 563

                                                                       
Query: 364 tgaatcctctgttttgataaagcatacaccatatttatagatgttagttattatgtaaaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgaatcctctgttttgataaagcatacaccatatttatagatgttagttattatgtaaaa 623

                                                                       
Query: 424 atgaagtgatccataaaaaacaattatgctgtagtcagttattgcttaactagaaaatta 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atgaagtgatccataaaaaacaattatgctgtagtcagttattgcttaactagaaaatta 683

                                                                       
Query: 484 tgtgtcaagctgcctcgtgacattattgaaaaaatatattcaggtaacttaccagatatt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgtgtcaagctgcctcgtgacattattgaaaaaatatattcaggtaacttaccagatatt 743

                                                                       
Query: 544 taatgacacacatgtagtaaaagcctattgagtggctttgcagtttttgatggagtggac 603
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 744 taatgacacacatgtagtaaaagcctattgagtggctttgcagtctttgatggagtggac 803

                                                                 
Query: 604 caactgcccaacaaccaggaatcttggtgagtgtattatgtatagcacagaggg 657
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 caactgcccaacaaccaggaatcttggtgagtgtattatgtatagcacagaggg 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no118_a17.g1 MSMg01no118_a17.g1 CHROMAT_FILE:
MSMg01no118_a17.g1 PHD_FILE: MSMg01no118_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:46 2005
         (285 letters)



>mm_chr1_41856847_41857531
          Length = 685

 Score =  543 bits (281), Expect = e-159
 Identities = 284/285 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttgcagcagtgatgtggaagtagatgaagaggcacataaatgatgtccctcctagata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 atttgcagcagtgatgtggaagtagatgaagaggcacataaatgatgtccctcctagata 426

                                                                       
Query: 61  tgctacatataggcataagagagatgaacacagtctaaatgccctccccacacatcatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgctacatataggcataagagagatgaacacagtctaaatgccctccccacacatcatga 366

                                                                       
Query: 121 aaaatgcagcaagtcagtcagtattaagcaagctcctcctgaaagccagtgaaccatatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 365 aaaatgcagcaagtcagtcagtattaagcaagctcctcctgaaagccagcgaaccatatc 306

                                                                       
Query: 181 ctgaacttttccaaaaacaaatacagtgtgtacatagaggtgtgatgcttgctcttctac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ctgaacttttccaaaaacaaatacagtgtgtacatagaggtgtgatgcttgctcttctac 246

                                                        
Query: 241 actgggctcctgatgagtgcaccagaatgagagaactgtcttaga 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 actgggctcctgatgagtgcaccagaatgagagaactgtcttaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)