Query= MSMg01no118_b07.b1 MSMg01no118_b07.b1 CHROMAT_FILE:
MSMg01no118_b07.b1 PHD_FILE: MSMg01no118_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:49 2005
(312 letters)
>mm_chr1_24459361_24460073
Length = 713
Score = 559 bits (289), Expect = e-164
Identities = 304/309 (98%), Gaps = 1/309 (0%)
Strand = Plus / Minus
Query: 5 gaattccttcctatcttaaa-atttatctttgcactagagatgatctcacagagcaatcc 63
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaattccttcctatcttaaatatttatctttgcactagagatgatctcacagagcaatcc 454
Query: 64 ttagtaactgacccaagttccttaacaactgttacttgtcccaaaaagaaggaatataca 123
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ttagtaactgatttaagttccttaacaactgttacttgtcccaaaaagaaggaatataca 394
Query: 124 atgctatgccttagaacttaagatactaagtttaatgagaaaaagagaaaatcctagatt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 atgctatgccttagaacttaagatactaagtttaatgagaaaaagagaaaatcctagatt 334
Query: 184 tagcatgacaacctgatggctcatgccacagacacaaagactccatgacgttcaaggcaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tagcatgacaacctgatggctcatgccacagacacaaagactccatgacgttcaaggcaa 274
Query: 244 caaaagcacagccagggcactcggtctccatgactacggagttctctttaagtgactaga 303
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 caaaagcacagccagagcactcggtctccatgactacggagttctctttaagtgactaga 214
Query: 304 actcctgag 312
|||||||||
Sbjct: 213 actcctgag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 713
Length adjustment: 9
Effective length of query: 303
Effective length of database: 704
Effective search space: 213312
Effective search space used: 213312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no118_b07.g1 MSMg01no118_b07.g1 CHROMAT_FILE:
MSMg01no118_b07.g1 PHD_FILE: MSMg01no118_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:49 2005
(478 letters)
>mm_chr1_24311373_24312250
Length = 878
Score = 832 bits (430), Expect = 0.0
Identities = 466/478 (97%)
Strand = Plus / Plus
Query: 1 ccattaacttcaaaggcaagtcaagggctgaataattttcatagaaaatagaggaaaggg 60
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccattagcttcaaaggcaaatcaagggctgaataattttcatagaaaatagaggaaaggg 260
Query: 61 gctgggacagagagatccttaagatcttaacaggataaaaatgtgctgcggctctctagc 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 gctgggacagagagatccttaagatcttaacaggataaaaatgtgctgaggctctctagc 320
Query: 121 acactgcttcctctcagtgcctcggggatcttgattccatcacgcttccctctgctcagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acactgcttcctctcagtgcctcggggatcttgattccatcacgcttccctctgctcagg 380
Query: 181 atgtggcatcctggcgagcgtgtgtgcaggagacacttaagcagcttctgtagctctttg 240
||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 381 atgtggcatcctggcaagcgtgcgtgcaggagacacttaagcagcttctgtagttctttg 440
Query: 241 cacttatttccttaatctgaatagctgtagctacttcatccactcggtggctatgcctgg 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 cacttatttccttaatctgaatagctgtagctacttcatccattcggtggctatgcctgg 500
Query: 301 acggtcactgtaatgcctggaagtgagatcttacaccatgacagcttgatgctcccatgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acggtcactgtaatgcctggaagtgagatcttacaccatgacagcttgatgctcccatgc 560
Query: 361 tgttggttttccctcccagccacagcacacacatccagctgtgagctgtgatggttggtc 420
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 tgttggttttctctcccagccacagcacacacacccagctgtgagctgtgatggttggtc 620
Query: 421 ctcactgtcggctggatgagatttagaatcaccatgacaacatacctctgggtgggtg 478
||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 621 ctcactgtcggttggatgagatttagaatcaccatggcaacacacctctgggtgggtg 678
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
