BAC Information

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BAC

Clone NameMSMg01-118C15
Chromosome1 (Build37)
Map Location 73,976,154 - 73,976,393
singlet/doubletsinglet
Overlap geneTns1
Upstream geneLOC672187, LOC100042860, Tnp1, 1700027A15Rik, Pinc, LOC672208, LOC100043291
Downstream geneRufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118C15.T7 (MSMg01no118_c15.b1)MSMg01-118C15.TJ (MSMg01no118_c15.g1)
ACCAG329111AG329112
length699724
length of high quality
(start - end)
240 (69 - 308)342 (74 - 415)
definitionCHROMAT_FILE: MSMg01no118_c15.b1 PHD_FILE: MSMg01no118_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:55 2005CHROMAT_FILE: MSMg01no118_c15.g1 PHD_FILE: MSMg01no118_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATTTGCGGCGCTAAACGACTCCTATTTCCCGAGGGGCGCGGAATTCTC
TTTATTCCCACAACGAAGGTGAATTGGTTGGNGATTTGCTCTAGCTTGTC
CCCTCAGCCCAGAGCAGGAGAGTAATTTGCTCAGGACACAAAACCAGCCT
AGGGCTGTGCCTAGCACCATGTCTCCAACCTCACAATATAGGTTCTGGCT
GGCCTAAGGGAACCCACAGTCTCACAGGGACACCAACACATGAGCTATAG
AAATGTCAGATCGACAGGATCACCCGTAGTGGCAAAAACAGCCAAGAGTC
AGTCATGTGATTACTGNATGGTATGGAGAGCGTAAGTACCCAGCCCGTAT
GGGGTATAGGTGGCCTACGTACCCAGGCAAGACAGTCTTCCAGCCAGCTG
TTACTCACATGTCCTAAGACTACCCAAACTTGGGAAGCCAGTGGCCTGTT
CCTCCCCACGCCTGCCACTCCATCTGAACATTCCCAGGCTCCCCTAGGTG
CTCAGCCCAGCTCCATTTGCTTCCCCGTGACACACAGTCATCCTCTCACC
CAGAGAGCCCTGTAACCCACAGCCTCCACTTGCCTGGCAAGGGCTCCGGT
ACCGGCCACAGCAGAGGACAAACCCAGAGTCACATGACCCTCCCTTCCTT
CTCACCCAGACATCACTTTGCCTAAGAAGTTAGACCCAATCCACGCACT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATGTATTATGCCTTTTGGGTCTGGATTT
TTCTTTGTACCTAAAGTTTTCATTGCTCATTCAATTGATATGTTGAAGGG
ACTATTCAGTCTTTCTATTTCTTTTTGGGTCAGATTTGGGAGTTTGTGTG
TTTCTAAGAAATGTATCTATTCCATTGTAGTGTTCCTTTATTTATTTATT
TATTTATCTTTTATTTTTTGTGGGGTCACTTACAATGTCTTTTTTTTTTC
ATTTCTGATTCTGGTCATTTTCTCCTTCATTTTTCTTTTCTTTTCCTTCC
TCCCCCCTCTCTTTCTCTCTCTCCTCCCTTCCTTCCTTCCTTCCTTCCTT
CCTTCCTTCCTTCCTTCCTTCATTAATTAATTATTTCTTTCGTTCGTGCC
TTCCTTTTCACTCTTTGTTCTTCTTCTTCCTTTTTCCAATCTCTGGTCTC
ACTGTCTCGCCAATAATCTTCCTTTCTTTAATACTTCAAAAGTAACATTT
CTCCTTCCCTCTTCCTCTTCTACTGGATTTTTTCATTTGTCTTGCCGTTT
ACTCGAGTGCCCTTTGCCCTTTGTACTTACCCGTCTCGCAAGCTTTCTAT
TTTCTTTAATTGCATCGTTTTGGTCTATGCTTCTCAAAATGAGTTATTCA
TTTAAAAATTTTATGTAATTCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_c15.b1 MSMg01no118_c15.b1 CHROMAT_FILE:
MSMg01no118_c15.b1 PHD_FILE: MSMg01no118_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:55 2005
         (240 letters)



>mm_chr1_73975954_73976593
          Length = 640

 Score =  420 bits (217), Expect = e-122
 Identities = 234/240 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgaattggttggngatttgctctagcttgtcccctcagcccagagcaggagagtaattt 60
           ||||||||||||| | | |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 gtgaattggttggtggtctgctctagcttgtcccctcagcccagagaaggagagtaattt 260

                                                                       
Query: 61  gctcaggacacaaaaccagcctagggctgtgcctagcaccatgtctccaacctcacaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctcaggacacaaaaccagcctagggctgtgcctagcaccatgtctccaacctcacaata 320

                                                                       
Query: 121 taggttctggctggcctaagggaacccacagtctcacagggacaccaacacatgagctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 321 taggttctggctggcctaagggaacccacagtctcacagggacaccaacacatgagccag 380

                                                                       
Query: 181 agaaatgtcagatcgacaggatcacccgtagtggcaaaaacagccaagagtcagtcatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaatgtcagatcgacaggatcacccgtagtggcaaaaacagccaagagtcagtcatgt 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)