BAC Information

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BAC

Clone NameMSMg01-118D10
Chromosome1 (Build37)
Map Location 115,289,007 - 115,289,316
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666635
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118D10.T7 (MSMg01no118_d10.b1)MSMg01-118D10.TJ (MSMg01no118_d10.g1)
ACCAG329147AG329148
length707711
length of high quality
(start - end)
324 (43 - 366)79 (145 - 223)
definitionCHROMAT_FILE: MSMg01no118_d10.b1 PHD_FILE: MSMg01no118_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:59 2005CHROMAT_FILE: MSMg01no118_d10.g1 PHD_FILE: MSMg01no118_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGATCCGCGGAAT
TCTGGGGACTGACCTGCGGTTGCATGTTACGAACACAACCCTAGGCTCTC
CATAGCTTTTTTGTGTGTCAAGGGGAGCAGTGTGTTCATTTGTAAGTCAT
AGTGCATGTGGAGGTCAGAGAACAACTTACCTGAGTCAGTTTTCTCCTTT
TGCTCTGTGGGTTCTGGGAATTGAACTCAGATTACCAGTCTTGTTGGAAA
GCATCATTCTGGTCTTACTGTTTTTTTGCTTTGTTTTGTTTTTTAAGTTG
GCCATCTAAATCTGCTGTCTTCTGACGTCTGACAACTCACAGCCTTCTCC
ACTGCTCATATCATGCATGCCTTCATTACTCTTGTCACGGACTGTATTTC
ATGATCAATCTATACCTATTTTTAAGATCTTTATTATTTGAACTTATTTA
CAGGACTCAATGGATATTACTTTCTACTTGCACCCACTGAAATATATTCT
ATTATCACAATGCACAGTTTTACTCTTGGCTAATTTTCACTTCTTACGCC
TTTCTGTTATAATTGTTTCACCTTCCTCCTATATTCCCCCACCCCCTTAC
ATATTTTTCCCCCCCTCTTAACAGTTTTGTCCGCCGAGATTTTGACATGC
TCCTACTGCCATATATTTCGCCCATTACTTTGTACAATCCCTTTGTTCCC
CACGACT
CAATACAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTCTCTGGGAAATGACATGCTTCTGAC
CCCTAAACAGGCAAATTGTTTTCTCATTGTCGCTTACCTTGACTGCATAC
TGAAACTGTATTTTACATACAACTATTTAAATACCATAAAACTAAATTTA
TTTGCACTGATCACTTTCTGTTTTACAATATCACTGCTACGTATCCTAAC
CGTGTGAATATACTGTGGTCATACTGTATACCTCACAACTATCCATGACC
ACATTTCTATGGTTTTCTCAACAATGCCTTTCTACACTTGCACCAATACC
ATAGACAGACTATAATAGACCACTTACTACGTAATATTCATATACAATAC
CTCCTCCCTAACTTACATACAAACCTCATTCACATTATTTTGTTAATATG
TTCTGCCAATTGTCAGCCCTTATTAATCTCTTATCATGCCTACCTTAAAA
TGAAATTCCTCATGTATATGTTGCCATGCCACAAATTTTTTACTACATAC
CCCACTGAGGTTTTCCTTTTGACACCCGCCCCACCTACCCCATCCCGTGT
GCACCTCCATTCCCAGAACACCTGCTAACACTCTCCATGTTGTATAATAC
TGCAAAAAATGTTTCTAGGACCCCTGCAATACTGATTTACTTCGCACACC
CTTCCTTACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_d10.b1 MSMg01no118_d10.b1 CHROMAT_FILE:
MSMg01no118_d10.b1 PHD_FILE: MSMg01no118_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:59 2005
         (324 letters)



>mm_chr1_115289007_115289731
          Length = 725

 Score =  545 bits (282), Expect = e-159
 Identities = 303/310 (97%), Gaps = 2/310 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgggg-actgacctgcggttgcatgttacgaacacaaccctaggctctccata 62
           |||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 310 ggaattctggggcactgaactgaggttgcatgttacgaacacaaccctaggctctccata 251

                                                                       
Query: 63  gcttttttgtgtgtcaaggggagcagtgtgttcatttgtaagtcatagtgcatgtggagg 122
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 250 gcttttttgtgtgtcaaggggagcagtgtgttcatttgtaagtcatagtgtatgtggagg 191

                                                                       
Query: 123 tcagagaacaacttacctgagtcagttttctccttttgctctgtgggttctgggaattga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tcagagaacaacttacctgagtcagttttctccttttgctctgtgggttctgggaattga 131

                                                                       
Query: 183 actcagattaccagtcttgttggaaagcatcattctggtcttactgttttttt-gctttg 241
           |||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||
Sbjct: 130 actcagattaccagtcttgttggaaagcatcattctggccttactgttttttttgttttg 71

                                                                       
Query: 242 ttttgttttttaagttggccatctaaatctgctgtcttctgacgtctgacaactcacagc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  ttttgttttttaagttggccatctaaatctgctgtcttctgacgtctgacaactcacagc 11

                     
Query: 302 cttctccact 311
           ||||||||||
Sbjct: 10  cttctccact 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 725
Length adjustment: 9
Effective length of query: 315
Effective length of database: 716
Effective search space:   225540
Effective search space used:   225540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)