BAC Information

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BAC

Clone NameMSMg01-118E14
Chromosome1 (Build37)
Map Location 45,927,101 - 46,093,086
singlet/doubletdoublet
Overlap geneLOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225
Upstream geneLOC100041752, LOC383640, Col3a1, Col5a2, EG666799, LOC631429, LOC666814, EG666819, Wdr75, EG433297
Downstream geneDnahc7b, LOC666855, Slc39a10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118E14.T7 (MSMg01no118_e14.b1)MSMg01-118E14.TJ (MSMg01no118_e14.g1)
ACCAG329200AG329201
length669701
length of high quality
(start - end)
249 (46 - 294)289 (71 - 359)
definitionCHROMAT_FILE: MSMg01no118_e14.b1 PHD_FILE: MSMg01no118_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:05 2005CHROMAT_FILE: MSMg01no118_e14.g1 PHD_FILE: MSMg01no118_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:05 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(46,092,838 - 46,093,086)(45,927,101 - 45,927,389)
sequence
CTCCTATTTTCANGAGATCCGCGGAATTCCTGACTGTTCCACTGTTGTCA
GCACTGTGTTCATGGCTGCAATTCAATAGCTTATTGATGATGGGTTCGGT
GTTTTCAGGTTTGCTGTCTGCCTAGAATGCAGTCTTTGTCTCTGTCATGA
TCATGGTCCACATTTAACATCTGACTAGTCTAGATATTAGAGTGCAGAAT
GAGGAATCCACTATCTAGTATGTAGTCTCTAGGAGGCAAGCTTCCTCCAC
TTTTTCGGGATTAGAACCTGTAAGACACAGGTGCAGAGACCATCTCTCAC
AGGTAGCACAGCTGCTGGTGGGGGAATAGACCTAGAGATGTACATTCACA
GGCCCCCTCCTCATATGAGGCTTAAGGCAGGACCCTTAGCTGATTTACCT
TAGACTCAGTTGAAGTAGATGGGGGAGTGGAGAAAAAAATCAGCGGAAGA
GTCTGTGGGTCTCAAAGCCTTGGATTCTCTGCAAACTTTGGGAGGCATTA
TTAATAACTTTGTGACTTGAAAAGGGGAAAAGACATATTGCTAGTGGAAT
GACTCTGGCGTTATTAGGGAACTTTATCCTTATTCGACTTCAGCTTCTCC
TGCTGTGAAAAAATATTAAGGGATGTCTTCGTCTGGGTCATATGTGATGA
TACAGTACCCCACGGTGGA
TCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGTACTATTAAAAAAATTTAAAGAGCTA
TCTATCAAGCTGAAAGAATGCCATGATTGCCACCACATAACCAAATGATA
GGCGTGTATAACAAGGACATTGAAATACACAAAATACACATTAAAATGAT
CTGTAGAACTGTGATTCAGATCATCCATATAAGATTAGCTATAACTTGGA
TCACATTAAAATCTTGATTATAATCATATTGTTTAAATATGAAAGATAAA
GTACTAATGAAGTTGTTCATATAAAAATAAAAGGTAATATATCACAATGT
TAATAAAACTTTTCTCTAACGCACCCCCAAAATAAATGGGTTCATTGAGG
GCTTAGATAACTGAATATTAATTGAGATAAAATAAAAATTTCATAGCCAT
ATATATATATGTGTATATATGTATGCATGTATATATATATATATGTATAT
ATATATATTTGAAGAATCTTACAATCATGCCTAGCATTCTTTACATGTAT
GTCACTACTCAAGCTGTACTTTCAAAGCCAGTGCCGCTTCTAGTCTATTC
TGACACTTCATGCAATACTCTGTTGAAGTAGTTAAACCCTCTTCCCTATG
CCACCTCTGATTATTCCCCTAAAATGACAATTTGCCTATCAATAACCCTC
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_e14.b1 MSMg01no118_e14.b1 CHROMAT_FILE:
MSMg01no118_e14.b1 PHD_FILE: MSMg01no118_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:05 2005
         (249 letters)



>mm_chr1_46092638_46093286
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtcagcactgtgttcatggctgcaattcaatagcttattgatgatgggttcggtgtttt 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 449 tgtcagcactgtgttcatggctacaattcaatagcttattgatgatgggttcggtgtttt 390

                                                                       
Query: 61  caggtttgctgtctgcctagaatgcagtctttgtctctgtcatgatcatggtccacattt 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 389 caggtttgctgtctgcctagaatgcagtttttgtctctgtcatgatcatggtccacattt 330

                                                                       
Query: 121 aacatctgactagtctagatattagagtgcagaatgaggaatccactatctagtatgtag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aacatctgactagtctagatattagagtgcagaatgaggaatccactatctagtatgtag 270

                                                                       
Query: 181 tctctaggaggcaagcttcctccactttttcgggattagaacctgtaagacacaggtgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tctctaggaggcaagcttcctccactttttcgggattagaacctgtaagacacaggtgca 210

                    
Query: 241 gagaccatc 249
           |||||||||
Sbjct: 209 gagaccatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no118_e14.g1 MSMg01no118_e14.g1 CHROMAT_FILE:
MSMg01no118_e14.g1 PHD_FILE: MSMg01no118_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:05 2005
         (289 letters)



>mm_chr1_45926901_45927589
          Length = 689

 Score =  513 bits (265), Expect = e-150
 Identities = 283/289 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgtactattaaaaaaatttaaagagctatctatcaagctgaaagaatgccatgattgc 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||
Sbjct: 201 tctgtactattaaaaaaatttaaagcgctatctatcaagctgaaagaatgttatgattgc 260

                                                                       
Query: 61  caccacataaccaaatgataggcgtgtataacaaggacattgaaatacacaaaatacaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caccacataaccaaatgataggcgtgtataacaaggacattgaaatacacaaaatacaca 320

                                                                       
Query: 121 ttaaaatgatctgtagaactgtgattcagatcatccatataagattagctataacttgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaaaatgatctgtagaactgtgattcagatcatccatataagattagctataacttgga 380

                                                                       
Query: 181 tcacattaaaatcttgattataatcatattgtttaaatatgaaagataaagtactaatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 tcacattaaaatcttgattataatcatattgtttaaatatgaaagatgaagtactaatga 440

                                                            
Query: 241 agttgttcatataaaaataaaaggtaatatatcacaatgttaataaaac 289
           ||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttgttcaaagaaaaataaaaggtaatatatcacaatgttaataaaac 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)