BAC Information

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BAC

Clone NameMSMg01-118I07
Chromosome1 (Build37)
Map Location 133,365,873 - 133,366,470
singlet/doubletsinglet
Overlap geneSrgap2
Upstream geneZp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, LOC100042826, LOC100042821
Downstream gene2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118I07.T7 (MSMg01no118_i07.b1)MSMg01-118I07.TJ (MSMg01no118_i07.g1)
ACCAG329370AG329371
length690699
length of high quality
(start - end)
596 (42 - 637)527 (76 - 602)
definitionCHROMAT_FILE: MSMg01no118_i07.b1 PHD_FILE: MSMg01no118_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:23 2005CHROMAT_FILE: MSMg01no118_i07.g1 PHD_FILE: MSMg01no118_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAAT
TCCACTTGGCTCAGCTATACTCACATCCCTTTTTTTTAACCAATGCATTT
AGCTGCATCTACAACCTCCTCCAAACAATTCAATATGTCATCCTTACCCT
TAGCACTCCTTAATAATTCCCCTTTTGTGGTTAGTTTCACTGAAACATAT
CCCAGAACATATTCAAGGACTAGAGGTCAAGGGTAATCTAGCCTGAGCCA
GTTTGGGATGACTGGTGCGTAACAAGGAAAACTATGTCCTCTAGGTGCAT
TTTTTATGTAAAATCTTCTATTTATCCTTTGCTTGGGCATAACAGTATGT
GCATATGACTAAATGTGCATCATGGGAAAAAAAAAAAACAAAACATGTGC
AGTATAAAACCCAAGCCTGTCCAAAACAGAGGACTGCCCACATTATTTCC
CTAGCAACCAACTCCTCCTGGTGGATCCTGTAATAAAGTTCAAAACAGTA
ACTATTGCTCTTGAGCACTCAAGCTTAAGGATTCACCCTGCTCTTTTGCA
CTATGCCCTGTGGTCCGTTTAATAGAACTACTTACTACTTTACAATTTGT
GTGCGCTTTTTTGTTGGTATTGTTCTTCTTTTTCTTTAAATAAGACACCA
AGACCCTGGAAACACCTGGTCCAGAAGACCCTCCCAGCAA
NACCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTGTGAGACAAACCTGGTTTGCAA
GGAGGTTGGTATCTGTTTTCAACCTTATCCTAAGGATTTTTCTAAGGCTT
TGCCTCCCCTCCCCAAAAGATACCAAGAGCCATGACTATGGGTCATGATG
GTACCCCCAAGAGGAATCAGGTCAATGCTCCCAACCCCTGATGGTTAACG
CCCACTCATCCAAGGATGAGATGACTATTGATCACCCCAGCTCCGTAGGG
CCTTATTGAAAAGAATTAAAAGGGAGGACAAAGCCAAACATGGCAAGATT
TGGGTTGAGCTGGGGTTCCTAGGGAAAAATTTAAGAGTCAATCTTGTCAG
TATTCTACTGATGCGAAGAGACACCATGTCCATGGCAACTTTTGTAAGGA
AAGCATTTAGATGGGCCTGGCTTATAGTTCAGAGGTTTATAGGTCATTAT
TGTCATGTTGGAAAGTAATGGAAAGCTGGCAGGCATGACTCTGGAGAAGG
AACAGAGTTCTACATCTGGATCTCCAACCAGCAGGAAAGAGGATGAGTTG
TTGGGCCTAGCTTGAGCTTCTGAAACATCAAAGCCCACTCCAAGTGACTT
ACTTTTCTCAAACAAGGTCACACACTACTCCAACAAGGCCACATGTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_i07.b1 MSMg01no118_i07.b1 CHROMAT_FILE:
MSMg01no118_i07.b1 PHD_FILE: MSMg01no118_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:23 2005
         (596 letters)



>mm_chr1_133365669_133366670
          Length = 1002

 Score = 1019 bits (527), Expect = 0.0
 Identities = 580/599 (96%), Gaps = 8/599 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattccacttggctca-gctatactcacatcccttttttttaaccaatgcatttagct 63
           |||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 205 ggaattccacttggcttaagctatactcacatcccttttttttaaccaatgcacttagct 264

                                                                       
Query: 64  gcatctacaacctcctccaaacaattcaatatgtcatccttacccttagcactccttaat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcatctacaacctcctccaaacaattcaatatgtcatccttacccttagcactccttaat 324

                                                                       
Query: 124 aattccccttttgtggttagtttcactgaaacatatcccagaacatattcaaggactaga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aattccccttttgtggttagtttcactgaaacatatcccagaacatattcaaggactaga 384

                                                                       
Query: 184 ggtcaagggtaatctagcctgagccagtttgggatgactggtgcgtaacaaggaaaacta 243
           ||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||
Sbjct: 385 ggtcaagggtaatctagcctgagccagtttgggataactagtgtgtaacaaggaaaacta 444

                                                                       
Query: 244 tgtcctctaggtgcattttttatgtaaaatcttctatttatcctttgcttgggcataaca 303
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 445 tgtcctctaggtgcattttttatgtaaaatcttctatttatcctttacttgggcataaca 504

                                                                       
Query: 304 gtatgtgcatatgactaaatgtgcatcatgggaaaa-aaaa-aaaacaaaacatgtgcag 361
           |||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||
Sbjct: 505 gtatgtgcatatgactaaatgtgcatcatggggaaacaaaacaaaacaaaacatgtgcag 564

                                                                       
Query: 362 tataaaacccaagcctgtcca---aaacagaggactgcccacattatttccctagcaacc 418
           |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||
Sbjct: 565 tataaaacccaagcctgtccatcaaaacagaggactgcccacattatttccctagcaacc 624

                                                                       
Query: 419 aactcctcctggtggatcctgtaataaagttcaaaacagtaactattgctcttgagcact 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aactcctcctggtggatcctgtaataaagttcaaaacagtaactattgctcttgagcact 684

                                                                       
Query: 479 caagcttaaggattcaccctgctcttttgcactatgccctgtggtc-cgtttaatagaac 537
           |||||| ||||||||||||||||||||||||||||||||||||||| | ||||||| |||
Sbjct: 685 caagctcaaggattcaccctgctcttttgcactatgccctgtggtctc-tttaataaaac 743

                                                                      
Query: 538 tacttactactttacaatttgtgtgcgcttttttgttggtattgttcttctttttcttt 596
           ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 744 tacttactactttacaatttgtgtgtgcttttttgttgttattgttcttctttttcttt 802


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 1002
Length adjustment: 10
Effective length of query: 586
Effective length of database: 992
Effective search space:   581312
Effective search space used:   581312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)