Query= MSMg01no118_i17.b1 MSMg01no118_i17.b1 CHROMAT_FILE:
MSMg01no118_i17.b1 PHD_FILE: MSMg01no118_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:25 2005
(582 letters)
>mm_chr1_121301330_121302311
Length = 982
Score = 1044 bits (540), Expect = 0.0
Identities = 570/580 (98%), Gaps = 1/580 (0%)
Strand = Plus / Plus
Query: 4 attcctgagggctcc-ctggccttggatggtgttcaaatgcatttttgtcttgagtgaca 62
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 attcctgagggcacagctggccttggatggtgttcaaatgcatttttgtcttgagtgaca 262
Query: 63 gggaggaaggaaggagggaggagagactccagggccccagtccagcttgtccttgaattt 122
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 263 gggaggaaggaaggagggaggagagactccagggccccagtccagcttgcccttgaattt 322
Query: 123 gctaagtttactcttcttgtcttccagctgctgtgtgaccttgagggagtcaagtagtgt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gctaagtttactcttcttgtcttccagctgctgtgtgaccttgagggagtcaagtagtgt 382
Query: 183 ctctgggcctccctctctagcagccagtagaaaggttagataaaataagataagaacctt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctctgggcctccctctctagcagccagtagaaaggttagataaaataagataagaacctt 442
Query: 243 gcaagaggactcaagccacaggatggttgcaaggtcttcttgccaggctacatttgaagc 302
|||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||
Sbjct: 443 gcaagaggactcaagccacaggatggttgcaaggccatcttgccaggctacacttgaagc 502
Query: 303 ctaccaaaggtgctatacaaggtgatactggaagtcaagcctgatggtgcatgctagggt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctaccaaaggtgctatacaaggtgatactggaagtcaagcctgatggtgcatgctagggt 562
Query: 363 cagaatcctacaccctcgggagggagactttgaaaacacagctcagggccccatgtcact 422
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cagaatcctagaccctcgggagggagactttgaaaacacagctcagggccccatgtcact 622
Query: 423 tggccatgttttccctcagaggcaatttgatgtgagttctggatctcagacattcaagaa 482
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gggccatgttttccctcagaggcaatttgatgtgagttctggatctcagacattcaagaa 682
Query: 483 aacttgtgggtctgcctgcttcccagtctacgtacagaagcccctagacttgtacacatg 542
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 683 aacttgtgggtctgcctgcttcccagtctacgtacagaagcccctagacttggacacatg 742
Query: 543 tacctacacatacagagagagagagagagagagagtgtgt 582
||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tacctacacatacagagagagagagagagagagagtgtgt 782
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no118_i17.g1 MSMg01no118_i17.g1 CHROMAT_FILE:
MSMg01no118_i17.g1 PHD_FILE: MSMg01no118_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:26 2005
(288 letters)
>mm_chr1_121443442_121444129
Length = 688
Score = 482 bits (249), Expect = e-140
Identities = 279/291 (95%), Gaps = 8/291 (2%)
Strand = Plus / Minus
Query: 1 ttactagtcagaa-atttgctagtgacttggttaggattcacttgaatccccgtaaaaaa 59
||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 487 ttactagtcagaatatttgctagtgacttggttaggattcacttgaatcccagt-aaaaa 429
Query: 60 aaaatcctatgtcctactgtcaagtcctaagcttagaa-tacatattgagtgacatattt 118
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 428 gaaatcctatgtcctactgtcaagtcctaagcttagaagtacatattgagtgacatattt 369
Query: 119 tccctgacagattagacactgttatatgttt--atatgtgctgttacagtagcagtactc 176
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 368 tccctgacagattagacactgttacatgtttcc---tgtgctgttacagtagcagtactc 312
Query: 177 tgctcctttgagaatggtagtgtctaatgagacaggcctgagggcgcctgtggaagcagt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tgctcctttgagaatggtagtgtctaatgagacaggcctgagggcgcctgtggaagcagt 252
Query: 237 agaggcagggctagtccatgagacagtgagaatgctgacagagtgaggctg 287
||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 251 agaggcagggcaagtccatgagacagtgagaatgctgacagagtgaggctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
