TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CATAACATACACTGCTTACTTTTCCTATTCCATGTTTATTTTTCATCTTT
AGTTTGATTAGATTAAGTTTCCTTTATTTAGACTTCAGCAGGAACAACAG
ACATAAAGAAATTTAGGGGATTTCAAACTTAATTTGAAAAGACAATCAAT
TAAACCACTACCATAAAAATATCACATCATTTAGAGGCTTATTCACCCCA
TGAGCTAAATGGCCCTAGCAAGATCCCAGGTCTTCTGTGTCCACTGGGCA
ACTGGTATGGATATTCAAGGGACATGCTGTGCTCTGACTCCCTGCTTGGC
CCAGCATGTGTTCACTGTCGGGCTCTGGCTTGGTAGAATGTTTGACATTG
GCTGGGGATGAATTTTCCCGGTCAGCCTTACTCTTGCCTGGGTTTCTGTT
GACTGAGCATGTGACTTTGTACTTTTCTCTGCAAGAGAAGAACAAGAGAA
AACACAAAAGCATACCATGTAATAACATGATTTACTTGCAGGATTCCATC
TGGTCTATTGTTTGAGGATGTTCAGCTCTTGATGGTGTCCTTAGGCAAAA
GCCATTCTTGTATTTTAGGAGCAGTTAGTGAGCGAGACAGAGGCTTCAGG
ATCTTCTGATGCGTGATTCTGTCATGATGATAACATCTCATCTTGCAAAT
ATCCCTT

ACTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGNCTGAAAANC
ACCTGANAAAATGTTCAGCACCCTTAATCATCAGGGAAATGCAAATCAAA
AGAATCCTGAGATTTCAGCTGGGAGCAGTCNNAATGNCTNNAAATCAAAA
CTCANGTGAACAGCAAATTCTTTCCATTATTTNNAAAAAAAAAAAAAAAT
CTTCCATTATAAAACTATTAAAAGTATAAAAGAAAAAAAATAAAAAAAAA
TTGGGGGGGTTTTTTTNAATTTTTNNNTTNNNTTCCCNNAAAAACCCCCA
AAATTTTTTTTTTTTTTTTCTTCCCCAAATTTTTCAATTTTTTAAAAAAA
AAATTTTCTCCTTTTTTTTAGTTGAAGTTTTTTNNNNTNNTTGAGAGTTT
GTAAAAAAAAGGGGGGTTAAGAGGAACTAAGGGGGTGGGGGNANNANNNN
NNNTATTTTATNCAAAGATCTTGGGGAAAAAGAAAAAAAAAAAAAAAGAT
AAAAAAAAAAGGGGGTCTGGNNNNNTNNTNNNNNNNTNNNNTNTNNTTTN
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTNTNTTTCT
CTTTCTTTTTNTNNNTTTTTTTTTTTTTTNNTTTTTTTNNNTCCTTTTTT
TTTTTTTTTTTTTTNTTTTTTTCTTTCTTTCTTTTCTTNCNCNCNNCCCC
CCTCCTTTTTTTTTCTCCCTTTTTTTTTTTCTTTTTTTCCCNTCCCCCCT
TTCTCTCTTTTCTTTTTTTTTTTTTTTTTCCCCCATCACAAA

Query= MSMg01no118_k13.b1 MSMg01no118_k13.b1 CHROMAT_FILE:
MSMg01no118_k13.b1 PHD_FILE: MSMg01no118_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:35 2005
         (646 letters)



>mm_chr1_12268561_12269606
          Length = 1046

 Score = 1218 bits (630), Expect = 0.0
 Identities = 642/646 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgcttacttttcctattccatgtttatttttcatctttagtttgattagattaagtttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 ctgcttacttttcctattccatgtttatttttcatctttagtttgattagattaagtttc 787

                                                                       
Query: 61  ctttatttagacttcagcaggaacaacagacataaagaaatttaggggatttcaaactta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 ctttatttagacttcagcaggaacaacagacataaagaaatttaggggatttcaaactta 727

                                                                       
Query: 121 atttgaaaagacaatcaattaaaccactaccataaaaatatcacatcatttagaggctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 atttgaaaagacaatcaattaaaccactaccataaaaatatcacatcatttagaggctta 667

                                                                       
Query: 181 ttcaccccatgagctaaatggccctagcaagatcccaggtcttctgtgtccactgggcaa 240
           |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 666 ttcaccccatgagctaaatggccctagcaagagcccaggccttctgtgtccactgggcaa 607

                                                                       
Query: 241 ctggtatggatattcaagggacatgctgtgctctgactccctgcttggcccagcatgtgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 606 ctggtatggatattcaagggacatgctgtgctctgactccctgcttgacccagcatgtgt 547

                                                                       
Query: 301 tcactgtcgggctctggcttggtagaatgtttgacattggctggggatgaattttcccgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tcactgtcgggctctggcttggtagaatgtttgacattggctggggatgaattttcccgg 487

                                                                       
Query: 361 tcagccttactcttgcctgggtttctgttgactgagcatgtgactttgtacttttctctg 420
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 486 tcagccttactcttgcctgggtttctgttgactgagcatgtgactctgtacttttctctg 427

                                                                       
Query: 421 caagagaagaacaagagaaaacacaaaagcataccatgtaataacatgatttacttgcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 caagagaagaacaagagaaaacacaaaagcataccatgtaataacatgatttacttgcag 367

                                                                       
Query: 481 gattccatctggtctattgtttgaggatgttcagctcttgatggtgtccttaggcaaaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gattccatctggtctattgtttgaggatgttcagctcttgatggtgtccttaggcaaaag 307

                                                                       
Query: 541 ccattcttgtattttaggagcagttagtgagcgagacagaggcttcaggatcttctgatg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccattcttgtattttaggagcagttagtgagcgagacagaggcttcaggatcttctgatg 247

                                                         
Query: 601 cgtgattctgtcatgatgataacatctcatcttgcaaatatccctt 646
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cgtgattctgtcatgatgataacatctcatcttgcaaatatccctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)