Query= MSMg01no118_k16.b1 MSMg01no118_k16.b1 CHROMAT_FILE:
MSMg01no118_k16.b1 PHD_FILE: MSMg01no118_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:35 2005
(316 letters)
>mm_chr1_77060518_77061234
Length = 717
Score = 528 bits (273), Expect = e-154
Identities = 303/313 (96%), Gaps = 1/313 (0%)
Strand = Plus / Minus
Query: 5 attccttacttatc-tccactccttcagctcgtcaaacctccttagctgcactagcctct 63
|||||||||| | | || |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 517 attccttactcagcttcaactccttcagctcgtcaaacctccttagctgcactaacctct 458
Query: 64 tctgccattatcatacccacacatgtcagtgtccctctggaactgaggtaaactgatgtg 123
||||| |||||||||| |||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 457 tctgctattatcatacacacacacgtcagtttccctctggaactgaggtaaactgatgtg 398
Query: 124 ggctcacagctgctctggaaagcacttcagccagtttgtcaaatttttcacttatatgac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ggctcacagctgctctggaaagcacttcagccagtttgtcaaatttttcacttatatgac 338
Query: 184 ccatgtgaagcctttcatcagaagccagccatttatccagtggaattttataacccttcg 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tcatgtgaagcctttcatcagaagccagccatttatccagtggaattttataacccttcg 278
Query: 244 ggttcttccacttggatatacatggtgggatcttccaagcctgctgttcttttacatgag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ggttcttccacttggatatacatggtgggatcttccaagcctgctgttcttttacatgag 218
Query: 304 atgaccaccaaga 316
|||||||||||||
Sbjct: 217 atgaccaccaaga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 717
Length adjustment: 9
Effective length of query: 307
Effective length of database: 708
Effective search space: 217356
Effective search space used: 217356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no118_k16.g1 MSMg01no118_k16.g1 CHROMAT_FILE:
MSMg01no118_k16.g1 PHD_FILE: MSMg01no118_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:35 2005
(238 letters)
>mm_chr1_76901936_76902573
Length = 638
Score = 445 bits (230), Expect = e-129
Identities = 236/238 (99%)
Strand = Plus / Plus
Query: 1 agtggacatttcaaactattcagtttatatttcatgctatttcaaaagaattgggggaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtggacatttcaaactattcagtttatatttcatgctatttcaaaagaattgggggaaa 260
Query: 61 aatctctcttgaaaaggaatgggtgattcaaataggtttggtaggcatgcaatttttatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatctctcttgaaaaggaatgggtgattcaaataggtttggtaggcatgcaatttttatt 320
Query: 121 ataaaacttgggtgtatgaatgtgcataaatcacatgggctggaagatggaggggcccag 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaaacttgggtgtatgaatgtgcataaatcacatgggctggaagatggaggggcccag 380
Query: 181 gagtgcatcgctctttgtattgatctctccatcttctctcagtccacattgtgactga 238
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagtgcatcgctctttgtactgatctctccatcttctctcagtccacattgtgactga 438
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space: 144041
Effective search space used: 144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
