BAC Information

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BAC

Clone NameMSMg01-118N10
Chromosome1 (Build37)
Map Location 51,447,786 - 51,602,781
singlet/doubletdoublet
Overlap geneObfc2a
Upstream geneTmeff2, Sdpr, LOC383504
Downstream geneMyo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118N10.T7 (MSMg01no118_n10.b1)MSMg01-118N10.TJ (MSMg01no118_n10.g1)
ACCAG329609AG329610
length718714
length of high quality
(start - end)
369 (46 - 414)189 (73 - 261)
definitionCHROMAT_FILE: MSMg01no118_n10.b1 PHD_FILE: MSMg01no118_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:48 2005CHROMAT_FILE: MSMg01no118_n10.g1 PHD_FILE: MSMg01no118_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(51,447,786 - 51,448,150)(51,602,596 - 51,602,781)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGCGG
AATTCACTTGTTTCTCGAGTGCTCACTAGCATTTGCCCCTTAATTATCTT
TCCTACTTCACATTTACCTAAAGGGTTCACTGTGCAGTATCTACACAACA
TCTACAACAAGCATATGAAACTCCTAACAGCCCCCCAAGAGTCTAGCAGA
AGCCCATGTTGTTGGGAAGGTGCCTGCGTGCATTCAGTGCCATTTGAATC
ACAATCTTGTGTCTTTCTCTCTTCACTTTCTACAAGGTCTCAAATGTAAA
CAGAGAGGTAGAAATCACACCCAGCTAGACTAACCTTCTCTATGATATCT
TACTTAAATTATTTCAAATTACATTTCTATTTTACCAAACAATTGCATAT
TTATTATAGTACCCACAACTCAGCAGGTTAAATACTTTTGAACTCCCTTT
GCTCATCATCAACGAAAAACAAAACAAACTTGGATTTTAACATACCCGAA
TTTGATGTTATTTATTGCATCTCAATCTGAAAATGGATAGAAAAAAACGA
ATACTCACATCTACAAACTATATATGATATTCACAGACCAATCCCTATTC
GAACACAATGCCTGAATGGACAACGCACACTCACAATCTGTCTCACCCTG
ATATTGTCAGGTTTTGTTCCACGAAGTTCCAGTCTCCCACACTATGAGAG
CCTTACTCGCCAACAGAG
CATTGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAATTTTGCCTTTTTTGGTCATTCAGTA
CATTCGTGTATCACTCACACGTCCAGGAACCCATGTCTGAACTCGCCAAG
GCGTGTGGCTGACTGACAGCAAGCCTTCCTTCCCAGGTGTTTCAAAGGGC
ATTCTTGTGGGCAGCAGACTGTTTACAGACAGTTTTGCTTTGTTTTGTTT
TTTACCAGCGGCACACAAGCAATCTACAGATTCTATGCAATCGCCATCAA
CATTCCAACTCAATTCTTCAATGAATTAGAAGGAGCAATTTGCAAATTCA
TCTGTAATAACACAAAACCTATCATACTAAAAACTCTTCTCAAGGATAAA
AGAATCTCGGGTGCAATCACCATGCCTGACCTAAAGCTTTACTACATAGC
AATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGATAAGCAGACC
CACGGAACAGAACTGAAGACCCAGAAATGAACCCTCACTCCTATGGTCAC
TTGATCTTCGACAAGGTAGCTAATACCATCCCGTGCAACAAAGACTGTAC
TTTCCACACTTGGCGCTGGCACAACTGGTTGTTATCGCGCAAAATAATGC
TAATCGATCCATACTTATCTCCTTGCCCTACGGCCCTATCTTCGTGCCTC
AAGGACCTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_n10.b1 MSMg01no118_n10.b1 CHROMAT_FILE:
MSMg01no118_n10.b1 PHD_FILE: MSMg01no118_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:48 2005
         (369 letters)



>mm_chr1_51447582_51448350
          Length = 769

 Score =  598 bits (309), Expect = e-175
 Identities = 351/365 (96%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacttgtttctcgagtgctcactagcatttgccccttaattatctttcctacttc 64
           |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 205 gaattcacttgtttcttgagtgctcactagcatttgctccttaattatctttcctacttc 264

                                                                       
Query: 65  acatttacctaaagggttcactgtgcagtatctacacaacatctacaacaagcatatgaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acatttacctaaagggttcactgtgcagtatctacacaacatctacaacaagcatatgaa 324

                                                                       
Query: 125 actcctaacagccccccaagagtctagcagaagcccatgttgttgggaaggtgcctgcgt 184
           |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||
Sbjct: 325 actcctaacagccccccaagagtctagcagaagcccatgttgtttggaaggcgcctgtgt 384

                                                                       
Query: 185 gcattcagtgccatttgaatcacaatcttgtgtctttctctcttcactttctacaaggtc 244
           |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 385 gcattcagtgccatttgaattacaatcttgtgtctttctctctccactttctacaaggtc 444

                                                                       
Query: 245 tcaaatgtaaacagagaggtagaaatcacacccagctagactaaccttctctatgatatc 304
           ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 445 tcaaatgcaaacagagaggtagaaagcacacccagctagactaaccttctctatgatatc 504

                                                                       
Query: 305 ttacttaaattatttcaaattacatttctattttaccaaacaattgcatatttattatag 364
           |||||||||||||||||||||| ||||||||||||  ||||||||||||||| |||| ||
Sbjct: 505 ttacttaaattatttcaaattagatttctattttagtaaacaattgcatattcattagag 564

                
Query: 365 taccc 369
           |||||
Sbjct: 565 taccc 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no118_n10.g1 MSMg01no118_n10.g1 CHROMAT_FILE:
MSMg01no118_n10.g1 PHD_FILE: MSMg01no118_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:49 2005
         (189 letters)



>mm_chr1_51602396_51602984
          Length = 589

 Score =  329 bits (170), Expect = 7e-95
 Identities = 182/186 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   caattttgccttttttggtcattcagtacattcgtgtatcactcacacgtccaggaaccc 60
           |||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 386 caattttgccttttttcgtcattcagtagattcgtgtatcactcacacgtcaaggaaccc 327

                                                                       
Query: 61  atgtctgaactcgccaaggcgtgtggctgactgacagcaagccttccttcccaggtgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atgtctgaactcgccaaggcgtgtggctgactgacagcaagccttccttcccaggtgttt 267

                                                                       
Query: 121 caaagggcattcttgtgggcagcagactgtttacagacagttttgctttgttttgttttt 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 caaagggcattcttgtgggtagcagactgtttacagacagttttgctttgttttgttttt 207

                 
Query: 181 taccag 186
           ||||||
Sbjct: 206 taccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)