Query= MSMg01no119_f12.b1 MSMg01no119_f12.b1 CHROMAT_FILE:
MSMg01no119_f12.b1 PHD_FILE: MSMg01no119_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:27 2005
(630 letters)
>mm_chr1_28268588_28269618
Length = 1031
Score = 1135 bits (587), Expect = 0.0
Identities = 617/627 (98%), Gaps = 1/627 (0%)
Strand = Plus / Minus
Query: 5 gaattcttgcttttcttcccctttctctgt-catcaatcccttacagtacttttgtctct 63
||||| |||||||| ||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 669 gaatttttgctttttttcccctctctctgtccatcaatcccttacagtacttttgtctct 610
Query: 64 aagatctgttcctaatgttgcaatagccacaagaatcccaagtgtgagtagtgacttggt 123
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 609 aagatctgttcctaatgttgcaatatccacaagaatcccaagtgtgagtagtgacttggt 550
Query: 124 tatatgaactgaaccaaggaaacttgtaggtattcaccaacatctctcaaagggagtctg 183
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 549 tatatgaactgaaccaaggaaacttgtagatattcaccaacatctctcaaagggagtctg 490
Query: 184 catgttttctttcagtgacagatctctaatcttcatgtatgagtcagaataaatttaaaa 243
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 489 gatgttttcttgcagtgacagatctctagtcttcatgtatgagtcagaataaatttaaaa 430
Query: 244 aataaggcaattccaaataaaattatttttcttctggggaagaacagacttgggctggtt 303
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 429 aataaggcaattccaaataaaattatttttcttctgaggaagaacagacttgggctggtt 370
Query: 304 gactgagttatttctttctatgttctgctccttaactatacctaggcttcttgttcattt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gactgagttatttctttctatgttctgctccttaactatacctaggcttcttgttcattt 310
Query: 364 tttatagagacttcattacctggtaggtttacccttcagctatcacaggcttgctttcta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tttatagagacttcattacctggtaggtttacccttcagctatcacaggcttgctttcta 250
Query: 424 ttccttatctgtgtttactttgctgtctttcaataagtctttcttgggcttggtaatata 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ttccttatctgtgtttactttgctgtctttcaataagtctttcttgggcttggtaatata 190
Query: 484 gctcagttaatagagtgcttgacttccatgcacaaagccctggcctctgtctcagctctg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 gctcagttaatagagtgcttgacttccatgcacaaagccctggcctctgtctcagctctg 130
Query: 544 tacaaactgggtaaggtgaaacactcttgtaatatgagaatatgagtgaaataggacttt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tacaaactgggtaaggtgaaacactcttgtaatatgagaatatgagtgaaataggacttt 70
Query: 604 caaggcaacctttggctacagaaggaa 630
|||||||||||||||||||||||||||
Sbjct: 69 caaggcaacctttggctacagaaggaa 43
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1031
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1021
Effective search space: 633020
Effective search space used: 633020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no119_f12.g1 MSMg01no119_f12.g1 CHROMAT_FILE:
MSMg01no119_f12.g1 PHD_FILE: MSMg01no119_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:28 2005
(554 letters)
>mm_chr1_28176891_28177844
Length = 954
Score = 971 bits (502), Expect = 0.0
Identities = 538/550 (97%)
Strand = Plus / Plus
Query: 5 ttgtacttctatccttttctttttgtaggagatttttggtagaatcatcaaagaatgaat 64
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 205 ttgtacttctatccttttccttttgtaggagatttttggtagaatcatcaaagaatggat 264
Query: 65 ttagatatgcataaaatgatagagcaataatgaatcaatttaccctgtcattattagatc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttagatatgcataaaatgatagagcaataatgaatcaatttaccctgtcattattagatc 324
Query: 125 ctagactcctcctattctgttaacaccatgaagtagctcttgatggcattcttctgttct 184
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 325 ctagactcctcctattctgttagcaccatgaagtagctcttggtggcattcttctgttct 384
Query: 185 gggacatcactgatatactgggggagttcaacacaaagagtcaaatactacattctatac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 385 gggacatcactgatatactgggggagttcaacacaaagagtcaaatactacattctagac 444
Query: 245 aaagtaaatgaattgtagggaagtaaaatttatgagactaaaatcatttttcattagaaa 304
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaagtaaatgatttgtagggaagtaaaatttatgagactaaaatcatttttcattagaaa 504
Query: 305 tcataaattcttcttcttctttacactcaatttccatgcctaattacagaggtttgatat 364
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 505 tcataaattcttcttcttctttacactcaatctccatgcctaattacagaggtttgatat 564
Query: 365 gtgttttgaattgaattaattatttttgtcatcatagacaggaatattcatggactttct 424
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 565 gtgttttgaattgaattaattatttttgtcatcatagaaaggaatattcatggactttct 624
Query: 425 ctcagatcagtacaagttctctggcatcaagtaattattcatgtgaaacagagttatact 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 625 ctcagatcagtacaagttctctggcatcaagtaattattcatgtgaaacagagttatgct 684
Query: 485 ctgcaatttttatcttttacgataatgggttgaatttattacatcttttgggctactaaa 544
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctgcaatttttatcttttattataatgggttgaatttattacatcttttgggctactaaa 744
Query: 545 gcctttgttc 554
| ||||||||
Sbjct: 745 gtctttgttc 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
