Query= MSMg01no119_k08.b1 MSMg01no119_k08.b1 CHROMAT_FILE:
MSMg01no119_k08.b1 PHD_FILE: MSMg01no119_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:51 2005
(645 letters)
>mm_chr1_30933869_30934907
Length = 1039
Score = 1154 bits (597), Expect = 0.0
Identities = 629/643 (97%), Gaps = 7/643 (1%)
Strand = Plus / Plus
Query: 4 gaattcaaatcccatcc-ccacatggtggctcacaaccatctataacgaaatctgatgct 62
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcaaatcccagcaaccacatggtggctcacaaccatctataacgaaatctgatgct 262
Query: 63 ctcttctggagtgtctgaagacagcttcagtgtacttacatataatacataaataaatat 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctcttctggagtgtctgaagacagcttcagtgtacttacatataatacataaataaatat 322
Query: 123 tttttaaaaaaataattttatggttaggggtcaccacagcacaaggaactgtgttaaagg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tttttaaaaaaataattttatggttaggggtcaccacagcacaaggaactgtgttaaagg 382
Query: 183 gtcatgccattttgaaggttgaaatctgatataatcgaagaaagccaattcctgcaattg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtcatgccattttgaaggttgaaatctgatataatcgaagaaagccaattcctgcaattg 442
Query: 243 gccactggcctccacacctatatcatggcccacacacctaccctgcaacataagtcaacg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gccactggcctccacacctatatcatggcccacacacctaccctgcaacataagtcaacg 502
Query: 303 taatcaagtattttaaaaaataaagtacaacatttgtgttgtgaaattttctgtggaaac 362
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 503 taatcaagtattttaaaaaataaagtacaacatttgtgtagtaaaattttctgtggaaac 562
Query: 363 cattttgaagatacacactgtcatgttagtttagaaaaggtttaagtatttttatgtttc 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 563 cattttgaagatacacactgtcatgttagtttagaaaaggtttaagtatttttatgttcc 622
Query: 423 aacatgagatgaaaacagaggcataaattatctagaacttttttagtgagataaccattg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aacatgagatgaaaacagaggcataaattatctagaacttttttagtgagataaccattg 682
Query: 483 aacatcacagtctcacccagaatactgtatcctgacaggctttctcccatctacatattg 542
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 683 aacatcacagtctcacccagaacactgtatcctgacaggctttctcccat------attg 736
Query: 543 actttccttccaagcatggctagccaggtgagacttccacatgattcatggataaaagga 602
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 737 actttccttccaagcatggctagccaggtgagccttccacatgattcatggataaaagga 796
Query: 603 agtgccctccctattcaggaatggataattgccatcacatacc 645
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 agtgccctccctattcaggaatggataattgccatcacatacc 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1039
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1029
Effective search space: 653415
Effective search space used: 653415
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no119_k08.g1 MSMg01no119_k08.g1 CHROMAT_FILE:
MSMg01no119_k08.g1 PHD_FILE: MSMg01no119_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:51 2005
(631 letters)
>mm_chr1_31012155_31013184
Length = 1030
Score = 1212 bits (627), Expect = 0.0
Identities = 630/631 (99%), Gaps = 1/631 (0%)
Strand = Plus / Minus
Query: 1 tgcctgcctctgcctcccgagtgctgggattaaaggcgtgtgctaccacgcccggcctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 tgcctgcctctgcctcccgagtgctgggattaaaggcgtgtgctaccacgcccggcctgt 827
Query: 61 gtctgctttctgattgctaggttcaaacgtgggttgcaccacaactggctgtactgagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 gtctgctttctgattgctaggttcaaacgtgggttgcaccacaactggctgtactgagga 767
Query: 121 ttttatggaactcttaatttgtttgtgacactagagatccagtctagacttgtatgtgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 ttttatggaactcttaatttgtttgtgacactagagatccagtctagacttgtatgtgct 707
Query: 181 aaacaagctatgaagcaactccccatgccaggactaagccaacctaagctcagctggcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 aaacaagctatgaagcaactccccatgccaggactaagccaacctaagctcagctggcca 647
Query: 241 tggtggcttatgcctttgcttcattccaatgtttgagtgttctgctcccttcccttccac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 tggtggcttatgcctttgcttcattccaatgtttgagtgttctgctcccttcccttccac 587
Query: 301 gtttgcttagttatcattgcagtagtttgatttggttacttcttcgatttaaaagtattc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gtttgcttagttatcattgcagtagtttgatttggttacttcttcgatttaaaagtattc 527
Query: 361 taaatgtgtcagaattttcactattactcaaaatcttcagatgatgccattaacttccag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 taaatgtgtcagaattttcactattactcaaaatcttcagatgatgccattaacttccag 467
Query: 421 ataagagtccagactctttagcaagctatttagaaagcactagcataaccccttggctac 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 at-agagtccagactctttagcaagctatttagaaagcactagcataaccccttggctac 408
Query: 481 cttgttacccttctagacatttgaagcttcatttccagcatgactcatgcttgctgaggc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 cttgttacccttctagacatttgaagcttcatttccagcatgactcatgcttgctgaggc 348
Query: 541 ctccacagcttcagatccagtttcttttgctcaggacattgtctttctagaatatttact 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ctccacagcttcagatccagtttcttttgctcaggacattgtctttctagaatatttact 288
Query: 601 ctttatatcattaacattagcttttcctcag 631
|||||||||||||||||||||||||||||||
Sbjct: 287 ctttatatcattaacattagcttttcctcag 257
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1030
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1020
Effective search space: 633420
Effective search space used: 633420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
