Query= MSMg01no119_m24.b1 MSMg01no119_m24.b1 CHROMAT_FILE:
MSMg01no119_m24.b1 PHD_FILE: MSMg01no119_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:04 2005
(648 letters)
>mm_chr1_35142888_35143935
Length = 1048
Score = 872 bits (451), Expect = 0.0
Identities = 487/499 (97%), Gaps = 1/499 (0%)
Strand = Plus / Minus
Query: 151 ctaaacatctggaaaagttcatggctgctcaaatgtactgctgtgagtaaagataggaca 210
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 1048 ctaaacatctggaaaagttcacggctgctcaaatgtgctgctgtgagtaaagataggaca 989
Query: 211 ccacaatgcctagatctctgggtggaagctccaagtcctcctttatgctacaatggaaat 270
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 988 ccacaatgcctagatctctgggtggaagctccaagtcctcccaaaggctacaatggaaac 929
Query: 271 tggtctgatgtcagctctactgttctctact-ggttacaatagtcaagggccagctcaga 329
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 928 tggtctgatgtcagctctactgttctctactgggttacaatattcaagggccagctcaga 869
Query: 330 aagggagggacaacagacccttgagttttactaggagagatttcaaattatctatagcta 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 aagggagggacaacagacccttgagttttactaggagagatttcaaattatctatagcta 809
Query: 390 tttataactattcatgtgtttgttgttaaacccaaactcttgagatgaggagatttctca 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 808 tttataactattcatgtgtttgttgttaaacccaaactcttgagatgaggagattcctca 749
Query: 450 aacagaaggatccactaatccattagcaatgtcaggcagaaagggaacaagagggtccct 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 aacagaaggatccactaatccattagcaatgtcaggcagaaagggaacaagagggtccct 689
Query: 510 tctgaaggatgactgtaaaaaggttggagctacaacttcataaatgagagtcaagagttt 569
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 688 tctgaaggatgactgtaaaaaggttggagctacaacttcataaatgagagccaagagtat 629
Query: 570 ttaatactggaagatgggaaggaaagtatgaatcttcatactctacccacactggctatg 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttaatactggaagatgggaaggaaagtatgaatcttcatactctacccacactggctatg 569
Query: 630 agcacaggcaggaaacaaa 648
|||||||||||||||||||
Sbjct: 568 agcacaggcaggaaacaaa 550
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no119_m24.g1 MSMg01no119_m24.g1 CHROMAT_FILE:
MSMg01no119_m24.g1 PHD_FILE: MSMg01no119_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:04 2005
(574 letters)
>mm_chr1_35043028_35044001
Length = 974
Score = 832 bits (430), Expect = 0.0
Identities = 509/548 (92%), Gaps = 28/548 (5%)
Strand = Plus / Plus
Query: 28 acacacacacacacacacacagacaaagagacacagagacacacagagagaaacagaaag 87
||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||
Sbjct: 246 acacacacacacacacacacagacaaagagacagagagacacacagag-g-aacagaaag 303
Query: 88 ccaaatgctgtgctactgagattttggaaagctttaaagccttagtagttcacagaaaaa 147
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 304 ccaaatgctgtgctactgagattttggaaaactttaaagccttagtagttcacagaaaaa 363
Query: 148 tagtaaaataatacaggtaatacagattaaactagtcctagaggtgggcagttactcctc 207
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 364 tagtaaaataatgcaggtaatacagattaaactagtcctagaggtgggcagttactcccc 423
Query: 208 agagtgtgcactgtatattt-ctttcttgtaagaaagtctagagggttttgtaggtttct 266
|||||||||||||||||||| ||||||||||||||||| ||||||| | | ||||||||
Sbjct: 424 agagtgtgcactgtatattttctttcttgtaagaaagtatagaggggctgg-aggtttct 482
Query: 267 caccttgccaagtttggctgatagtgttggcccagagcctgtaaggaccaaggggctggc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 caccttgccaagtttggctgatagtgttggcccagagcctgtaaggaccaaggggctggc 542
Query: 327 tcctgtggcaagtgtagctagagtgctgtccttcgcaggcgccgaactgggaagcataag 386
|||||||||||||||||||||||||||||||| || || ||||||||
Sbjct: 543 tcctgtggcaagtgtagctagagtgctgtcct-----gg-----aa------agcataag 586
Query: 387 ccagccctgggggctgccacctctgaccttctggatcttacttggaatggatgatggtgg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ccagccctgggggctgccacctctgaccttctggatcttacttggaatggatgatggtgg 646
Query: 447 acttttaaggagcatgtactctccatgaacgtttttgttccatgctggtcaaccttgggg 506
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 647 actttcaaggagcatgtactctccatgaatgtttttgttccatgctggtcaaccttgggg 706
Query: 507 ttttgacagttctgtgagggcatctgagaggacggtgaaaaacatcagttaggtggctga 566
|| || |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 707 tt--ga------tgtgagggcatctgagaggatggtgaaaaacatcagttaggtggctga 758
Query: 567 aaagaagg 574
||||||||
Sbjct: 759 aaagaagg 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
