BAC Information

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BAC

Clone NameMSMg01-119O20
Chromosome1 (Build37)
Map Location 162,071,560 - 162,071,978
singlet/doubletsinglet
Overlap geneTnn
Upstream gene4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484, Tnr, 4930523C07Rik, 4930562F07Rik
Downstream geneMrps14, Cacybp, Rabgap1l, Gpr52, EG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119O20.T7 (MSMg01no119_o20.b1)MSMg01-119O20.TJ (MSMg01no119_o20.g1)
ACCAG330425AG330426
length719715
length of high quality
(start - end)
523 (41 - 563)591 (69 - 659)
definitionCHROMAT_FILE: MSMg01no119_o20.b1 PHD_FILE: MSMg01no119_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:12 2005CHROMAT_FILE: MSMg01no119_o20.g1 PHD_FILE: MSMg01no119_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTCT
TTCTTTGATACCCTCTCAAAGCAGAGGCTGGGACTAGCAAGTAGGGGCTA
CAGTGAGAAGAAAGGCTCTGAGAGGTTCTTGTCTATAGAAGAGAGAATCA
GAGATACAACAGAGGGACCTTGGGATAACTAGGTTCATACTCTGCCTAAT
ATAAAAGTTCATTGTCATACATCCTTGATGAATGGTCAGCCACAATGGGT
GGCAATGCCTCCAAGGTAAAGATGACAAGATCTTGGAAGGGGGCAAGGCT
GGGAATCTTGGAGGTTTTCTTTTTCTTTCTTTCCTTTTTTTTTCCTGTCT
CATACTGTAAGAGCAAGTTCTATCAGCCTGGGATACAGCTATTGTAATTC
TAAGTGTTCACAAAACCTCTCAGTTGACCCCTTCCAAAAGTTTTTCCCAT
AGAGTGCCATCCATTTGAATTAAAATTTTAGGGTTGTTTTCCAATTGGCA
GGGCAAATGTTCAGCCCTCTTATTAGTCTTATTGTGAACAAAGGAATATG
ATGAGTGTCCTTTATAGGACAGAGCAACAGGGCAGCATGAATACACTGGG
GACCTTGTGAAAGTATTATAATTTGATAGAAGGTTCTAAGAAGATGATTA
CAATTACCAGGTTAATATTCCACCTGCTTTGCAATTTTGTTTTGCGCTAT
TGTATCTTCGTATTGAACA
AATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTATGTGAACCAGGCTGGCCTTAAACTCACA
GAGATCTGCCAGCCTCCAACTTAAAAGCATGCTGCTATACCCAGCTAAGG
TCTAGTATTTTGATCAGTGGAATAAAGAAGGAGAAGAATGATGAGCCAAA
GGAAGTATGCAAACAAAATCTATACATACTGGCTGGCAGCACCCTAAGTT
TGGAAAGAGACATAAACCTACAGGTGCAAAAAGCTGAATAGCTTCAAGCA
GGCTATGCCAAAGGACTGGATTGTAATTGAGCTCTGATAACTGAAGACAA
AGGATGGGTTTCAAGTCATCATAATTGAGCTCTGATAACTAAAGAGAGGC
AGGCTGTTGAAAGGTTCCAGGAAACATATAAATAAAATGAGATTTCTTCT
ATTTGCTAAATTTCTAAATTATTTCTGTTGGTAGCAGTAAACATTATTAC
GCTGATATGACTCTAAATGTATGCAGGGAGGGGTTGCTTATGACCATTAC
GAGTGAGGAAAAGCAAGGGAATAAGGAGAAGGTGACACATATATGCTTCA
CTCCAGTGAGTTAACTGACTTTGGTAAACTGTATAAACACTACACCTATT
CTGACCTGCAGGGTAACCATTCCGAGAAATGCCTGACACCATCAATAGGA
TTAAACCCTATTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_o20.b1 MSMg01no119_o20.b1 CHROMAT_FILE:
MSMg01no119_o20.b1 PHD_FILE: MSMg01no119_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:12 2005
         (523 letters)



>mm_chr1_162071056_162071978
          Length = 923

 Score =  787 bits (407), Expect = 0.0
 Identities = 415/419 (99%), Gaps = 3/419 (0%)
 Strand = Plus / Minus

                                                                       
Query: 108 tcagagatacaacagagggaccttgggataactaggttcatactctgcctaatataaaag 167
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 tcagagatacaacagagggaccttgggataactaggttcatactctgcctaatataaaag 864

                                                                       
Query: 168 ttcattgtcatacatccttgatgaatggtcagccacaatgggtggcaatgcctccaaggt 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 ttcattgtcatacatccttgatgaatggtcagccacaatgggtggcaatgcctccaaggt 804

                                                                       
Query: 228 aaagatgacaagatcttggaagggggcaaggctgggaatcttggaggttttctttttctt 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 aaagatgacaagatcttggaagggggcaaggctgggaatcttggaggttttctttttctt 744

                                                                       
Query: 288 tctttcc---tttttttttcctgtctcatactgtaagagcaagttctatcagcctgggat 344
           |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tctttccttttttttttttcctgtctcatactgtaagagcaagttctatcagcctgggat 684

                                                                       
Query: 345 acagctattgtaattctaagtgttcacaaaacctctcagttgaccccttccaaaagtttt 404
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 683 acagctattgtaattctaagtgttcacaaaagctctcagttgaccccttccaaaagtttt 624

                                                                       
Query: 405 tcccatagagtgccatccatttgaattaaaattttagggttgttttccaattggcagggc 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tcccatagagtgccatccatttgaattaaaattttagggttgttttccaattggcagggc 564

                                                                      
Query: 465 aaatgttcagccctcttattagtcttattgtgaacaaaggaatatgatgagtgtccttt 523
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aaatgttcagccctcttattagtcttattgtgaacaaaggaatatgatgagtgtccttt 505


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)