BAC Information

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BAC

Clone NameMSMg01-120B06
Chromosome1 (Build37)
Map Location 33,209,694 - 33,210,195
singlet/doubletsinglet
Overlap geneLOC100040828
Upstream geneKhdrbs2, EG408191, EG633498, LOC213711
Downstream geneEG666108, Prim2, 1700001G17Rik, Rab23, Bag2, Zfp451, OTTMUSG00000022109, B230209C24Rik, Dst
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120B06.T7 (MSMg01no120_b06.b1)MSMg01-120B06.TJ (MSMg01no120_b06.g1)
ACCAG330535AG330536
length705697
length of high quality
(start - end)
587 (45 - 631)489 (74 - 562)
definitionCHROMAT_FILE: MSMg01no120_b06.b1 PHD_FILE: MSMg01no120_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:24 2005CHROMAT_FILE: MSMg01no120_b06.g1 PHD_FILE: MSMg01no120_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCG
GAATTCTTTGCTTACCTGTTCTTTGTCCCATTTTTAAGTGGGTTATTTGT
TTTCTCAATGTTCAGTGTTTTTTGTAGTTCTTTATATATTTTAGACATTA
ACTTTCTATTAGATGTGCAACTGGTAAAATTCTTTTCCCAGTGTGTGGCC
TGCTGCCTTGCCTAAATGATGGGCGCATGATACCTAAAAGCTTTTGCCAT
ACAAAAGCTTTTTAAATTCATGAATTTGCATTTATTAATTATTATTCTTA
GTGCCTGTGCTACCAGTGCTCTGTTCAGAAAGTCTTTTTCTGTCCAATAA
TTCCACGACTACTCCCCCTTCCCTTCTTCATATTAGTCTTATAACACTGC
ATGCCATTTTTTTGCCAGTTTTGCTTCATTCATATTTACATTCTTAGGAT
CAGATTTAGTTGTTACAGAGCATTTTACATGACTTGACTTGTTTACCAGA
ATATTGTAGTTGAGACTACCCAACAACTTGCCCATCTGGATAGCTAGTTA
TATTTCCTGTCCAATATCTCCTTAACTCTAGGCAAATAAATAGTTTAATT
AATTTATATTATGAAGCTACCCTTTTTTTTAAAAAGAAATATCATCTCTT
ACATGTGCTAGTGACTTTTCTCAAGAATGGACAAAACTTGGCAGTGTTTG
CCTGA
GAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTACTGAGGAATACCAAATGGCTAAG
AAGCACCTAATGAAATGTTCAACACCGTAGTCATCAGGGAAATGTAAATC
AAGACAACCCTGAGATTCCACCTCATACCAATCAGAAGGCTAAGATTAAA
AACTCAGGTGACAGCAGATACTCGAGAGAATGCGGAGAATGAGGAACACT
CCTCCATTGTTGGTAGGATTACAAGCTGGTACAATCACACTAGAAATCAG
TCTGGTAGCTCCTCAGAAAATTGGACATAGTATTACTCGAGGACCCAGCT
ATACCACTCCAGGGCATATCCCAAAAGATGCTACTACATATAGGAAGGAC
ACACACTCCACTATGTTCTTAGCATATATATATATATATACATATACATA
TATATATATGTATATTTAATTTCTTTTTTATTAGATATTTTCTTTATATA
CATTTCAAATGCTATCCCAAAAGTTCCCTATACCTTCCCTCTGCCCTGCT
CCCCTACCCACCCATTCCCACTTCTTGGTCCTGGCATTCTCCTGAACTGG
GGCATATAAAGTTGGCCATACCAAGGAGCCTCTCTTCCCAGTGATGAGGG
AACAAAATACCTATGAAAGGAGTTACCGAGACCAAGTTTGTAGATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_b06.b1 MSMg01no120_b06.b1 CHROMAT_FILE:
MSMg01no120_b06.b1 PHD_FILE: MSMg01no120_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:24 2005
         (587 letters)



>mm_chr1_33209208_33210195
          Length = 988

 Score =  917 bits (474), Expect = 0.0
 Identities = 495/502 (98%), Gaps = 1/502 (0%)
 Strand = Plus / Minus

                                                                       
Query: 86  ctttatatattttagacattaactttctattagatgtgcaactggtaaaattcttttccc 145
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 ctttatatattttagacattaactttctattagatgtgcaactggtaaaattcttttccc 929

                                                                       
Query: 146 agtgtgtggcctgctgccttgcctaaatgatgggcgcatgatacctaaaagcttttgcca 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 agtgtgtggcctgctgccttgcctaaatgatgggcgcatgatacctaaaagcttttgcca 869

                                                                       
Query: 206 tacaaaagctttttaaattcatgaatttgcatttattaattattattcttagtgcctgtg 265
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 868 tacaaaagctttttaaattcatgaatttgcatttattacttattattcttagtgcctgtg 809

                                                                       
Query: 266 ctaccagtgctctgttcagaaagtctttttctgtccaataattccacgactactccccct 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 ctaccagtgctctgttcagaaagtctttttctgtccaataattccacgactactccccct 749

                                                                       
Query: 326 tcccttcttcatattagtcttataacactgcatgcca-tttttttgccagttttgcttca 384
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 748 tcccttcttcatattagtcttataacactgcatgccattttttttgccagttttgcttca 689

                                                                       
Query: 385 ttcatatttacattcttaggatcagatttagttgttacagagcattttacatgacttgac 444
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 688 ttcatatttacattcttaggatcagatttagttgttacagagcattttagatgacttgac 629

                                                                       
Query: 445 ttgtttaccagaatattgtagttgagactacccaacaacttgcccatctggatagctagt 504
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 628 ttgtttaccagaatattgtagttgagactacacaacaacttgcccatctggatagctagt 569

                                                                       
Query: 505 tatatttcctgtccaatatctccttaactctaggcaaataaatagtttaattaatttata 564
           |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tatacttcatgtccaatatctccttaactctaggcaaataaatagtttaattaatttata 509

                                 
Query: 565 ttatgaagctaccctttttttt 586
           |||||||||||| |||||||||
Sbjct: 508 ttatgaagctacactttttttt 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 988
Length adjustment: 10
Effective length of query: 577
Effective length of database: 978
Effective search space:   564306
Effective search space used:   564306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)