BAC Information

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BAC

Clone NameMSMg01-120F20
Chromosome1 (Build37)
Map Location 97,944,581 - 97,945,232
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
Downstream geneGm1833, Slco4c1, EG329217, Slco6b1, LOC670708, LOC623430
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120F20.T7 (MSMg01no120_f20.b1)MSMg01-120F20.TJ (MSMg01no120_f20.g1)
ACCAG330751AG330752
length710750
length of high quality
(start - end)
659 (45 - 703)---
definitionCHROMAT_FILE: MSMg01no120_f20.b1 PHD_FILE: MSMg01no120_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:46 2005CHROMAT_FILE: MSMg01no120_f20.g1 PHD_FILE: MSMg01no120_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGGATCCGC
GGAATTCACTTGTATACCTAATCTACTTTCGGGGCAAAATGTCTTGAGGA
AGTGGAATTAACTTCAAAATACAAACATCATCTGGATAATCTACAACAAT
GTTTAGCAACAAAAAAGGATGTTATCTGAAGCCTGGGGTTGGCCTACTAG
AACCCTAAAGGAAGAAGTGTAATTCTTCGTTGATCATTCAGGGAATGGCC
ATGACACCACTGTTGTTTTACTCACACCAAATATTTGTAACATTCAGGAA
GAGTAACAGTGGATCAGGTTTGGCATAGTATGGATAGGACTTTATGAACA
ATCTCCTCTAGCAAAGCAGGGCACTGACATAAAATATAGGTTACAAAATG
TCTTATATGATGTTCAGTTTATGGCACTCTATTAGAGTATCCATCAAAAA
TGGTTGCAGTAAGTCCTCATAACTAAAAACACATATACTGGGGCTGAAAA
TATAACTCATAGTTTATAAGTAGTATCTGTTCTCCCAGAGAAACCAGTTT
AATTCCCAGCACCCACATGGCAGCTCACAACTGTCTGTAATTTTAGTTCC
TGAGGATCCAATACAATCACAAAGACATGTACATGTAAGCAAAACATCAA
TACCCATTAAATAAAAATTATATAAAACAAAAACAAAAAATAAATTCTGA
GCCTTTACTT
AAGAGAAGAGAAAAGCGGCAGGGAGGGGAATGCACCCGGCAACCGGCGGG
TCGTGCTACAATGATAAGAGTAGGAAGGAGGGGGAAGTTTCCCAGCCGAA
GGNGACCNANANAATTACAGCAGCAGGGGGANCAGACACGCGCAGCCGGC
CAGCAGCAAAAGACCGAACACCCCCCGACGAGCCACAAGGCACAGCGAGA
NACACCNACNACAAAAAGGCAACCAAACAGAGCAGAAAGAGGAAGACACC
CCACAGACCCAGAGAAAACGAAGAGAGGAAAAAGGAAAAACGGAAAANAC
ACACTCTTAAAGAAAAACCAGGGGAGGGACAAGAAGACCGGCACAACGGG
CAGGAGAGAAAGGCGGAGATTTTTTTTTTTAGAGCCACAGAGAGCAGGAC
AACAAACCGCTAACAACCCCCCCCGCANAAAGGAGGAAAAGCGCAACANN
NGGGGACGCNGGGCAAGAGGGAGGAAACCAACAGGAGGCCCGAGAGAAGG
AAAAACGAGGCGGGCCCAAGGAGAAACAACGCGAAGACACGGGAGGGAGC
GGAAAACGTAGGAGACAAATGGGGGGGGACTAGGAGGAAAGCGGAGAACG
GGGGGCATGCATACTTTAATTAAAGCGGGCCGAAAGGGCAAGACGGGGGA
ATAGGGGGGGACATACGGGGGGGGGAAAAAGGGGAAAAGCGGGGGGGAAG
AAAGGAGGGGGTATTTGTGGCGGGAAAGGAGGGGAAAAAAGTGGGGATAA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_f20.b1 MSMg01no120_f20.b1 CHROMAT_FILE:
MSMg01no120_f20.b1 PHD_FILE: MSMg01no120_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:46 2005
         (659 letters)



>mm_chr1_97944491_97945549
          Length = 1059

 Score = 1230 bits (636), Expect = 0.0
 Identities = 648/652 (99%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcacttgtatacctaatctactttcggggcaaaatgtcttgaggaagtggaattaa 67
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gaattcacttgaatacctaatctactttcggggcaaaatgtcttgaggaagtggaattaa 683

                                                                       
Query: 68  cttcaaaatacaaacatcatctggataatctacaacaatgtttagcaacaaaaaaggatg 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 cttcaaaatacaaacatcatctggataatctacaacaatgtttagcaacaaaaaaggatg 623

                                                                       
Query: 128 ttatctgaagcctggggttggcctactagaaccctaaaggaagaagtgtaattcttcgtt 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ttatctgaagcctggggttggcctactagaaccctaaaggaagaagtgtaattcttcgtt 563

                                                                       
Query: 188 gatcattcagggaatggccatgacaccactgttgttttactcacaccaaatatttgtaac 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gatcattcagggaatggccatgacaccactgttgttttactcacaccaaatatttgtaac 503

                                                                       
Query: 248 attcaggaagagtaacagtggatcaggtttggcatagtatggataggactttatgaacaa 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 attcaggaagagtaacagtggatcaggtttggcatagtatggataggactttatgaacaa 443

                                                                       
Query: 308 tctcctctagcaaagcagggcactgacataaaatataggttacaaaatgtcttatatgat 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tctcctctagcaaagcagggcactgacataaaatataggttacaaaatgtcttatatgat 383

                                                                       
Query: 368 gttcagtttatggcactctattagagtatccatcaaaaatggttgcagtaagtcctcata 427
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 382 gttcagtttatggcactctattagagtatccatcaaaagtggttgcagtaagtcctcata 323

                                                                       
Query: 428 actaaaaacacatatactggggctgaaaatataactcatagtttataagtagtatctgtt 487
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 322 actaaaaacacatatactggggctgaaaatataactcatagtttataagtagaatctgtt 263

                                                                       
Query: 488 ctcccagagaaaccagtttaattcccagcacccacatggcagctcacaactgtctgtaat 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ctcccagagaaaccagtttaattcccagcacccacatggcagctcacaactgtctgtaat 203

                                                                       
Query: 548 tttagttcctgaggatccaatacaatcacaaagacatgtacatgtaagcaaaacatcaat 607
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tttagttcctgaggatccaatacaatcacaaagacatgtacatgtaagcaaaacatcaat 143

                                                               
Query: 608 acccattaaataaaaattatataaaacaaaaacaaaaaataaattctgagcc 659
           |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 acccataaaataaaaattatataaaacaaaaacaaaaaataaattctgagcc 91


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)