Query= MSMg01no120_k11.b1 MSMg01no120_k11.b1 CHROMAT_FILE:
MSMg01no120_k11.b1 PHD_FILE: MSMg01no120_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:10 2005
(617 letters)
>mm_chr1_166575176_166576189
Length = 1014
Score = 1162 bits (601), Expect = 0.0
Identities = 612/617 (99%), Gaps = 3/617 (0%)
Strand = Plus / Minus
Query: 1 tcatttgctccgtgcctcagttaatcaaaatgttctttgtgtaaaatttggtgtagataa 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 tcatttgctccatgcctcagttaatcaaaatgttctttgtgtaaaatttggtgtagataa 755
Query: 61 ggaaagagctgatggtggctgtcttccgaagaaagctaccatgatttggaactgtaattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 ggaaagagctgatggtggctgtcttccgaagaaagctaccatgatttggaactgtaattt 695
Query: 121 ttttttaaaaaaacgatattaaaatctgcagttatccaaagccttcgccttcccaccatt 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 tttt---aaaaaacgatattaaaatctgcagttatccaaagccttcgccttcccaccatt 638
Query: 181 attcttggctacttcatctttcagaagtatttccacttaaaaggcaaatgggatgacagg 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 attcttggctacttcatccttcagaagtatttccacttaaaaggcaaatgggatgacagg 578
Query: 241 aagagatagctgtcagagaataactagctctccattcttcatggaaaagaaggaaggcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 aagagatagctgtcagagaataactagctctccattcttcatggaaaagaaggaaggcta 518
Query: 301 aggaaagagacacactgtgtgtttccattctcatttccgtcccaggtggcccttagattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 aggaaagagacacactgtgtgtttccattctcatttccgtcccaggtggcccttagattt 458
Query: 361 tgaataagtgagaacagaaaataactcaaagtatacaatctatactttctctcttccttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tgaataagtgagaacagaaaataactcaaagtatacaatctatactttctctcttccttt 398
Query: 421 gactttgcaaccttcctgtgttgatctctaagaagagtaacttcagaagccaagtttgtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gactttgcaaccttcctgtgttgatctctaagaagagtaacttcagaagccaagtttgtt 338
Query: 481 tcagaatgctaattcctatgaaacaaagacactctatcatcatcatcacagttgaaaatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tcagaatgctaattcctatgaaacaaagacactctatcatcatcatcacagttgaaaatg 278
Query: 541 accttctctactactaaaaaatgaatgagtatttgttggctatgactcagcacattaatg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 accttctctactactaaaaaatgaatgagtatttgttggctatgactcagcacattaatg 218
Query: 601 gagcactgtagcagtaa 617
|||||||||||||||||
Sbjct: 217 gagcactgtagcagtaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1014
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1004
Effective search space: 609428
Effective search space used: 609428
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no120_k11.g1 MSMg01no120_k11.g1 CHROMAT_FILE:
MSMg01no120_k11.g1 PHD_FILE: MSMg01no120_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:10 2005
(618 letters)
>mm_chr1_166533453_166534470
Length = 1018
Score = 1094 bits (566), Expect = 0.0
Identities = 605/618 (97%)
Strand = Plus / Plus
Query: 1 ttttaggcttatttaaccctagattgcattctttaaaaaataaaaaccttattttatttt 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 ttttaggcttatttaaccctagattgcattctttaaaaaataaaaaacttattttatttt 260
Query: 61 tacttatatgtatgtgcacttctgggtatgtccacaggagtgcaagtgactgcagaggcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacttatatgtatgtgcacttctgggtatgtccacaggagtgcaagtgactgcagaggcc 320
Query: 121 agaagggggcgctggatcccctggagtttgagctacaggtggttgtgagctgatacgtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaagggggcgctggatcccctggagtttgagctacaggtggttgtgagctgatacgtgt 380
Query: 181 gctgggaacagaactttggtcctatgaagagcaggaagtagtcttaattaactgttgagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgggaacagaactttggtcctatgaagagcaggaagtagtcttaattaactgttgagc 440
Query: 241 catctctccagaccttatccttttatttaatatatttctatttattctttgagaatttca 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 catctctccagaccttatccttttatttaatatatttctacttattctttgagaatttca 500
Query: 301 tatatgcatatgatatattccaatcatatttaacctctacaacttctttttttttcctgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatatgcatatgatatattccaatcatatttaacctctacaacttctttttttttcctgt 560
Query: 361 caaatcccagccacatcttcctcccaacttcatatcttcttctctttatttttaatataa 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 caaatcccagccacatcttcctcccaacttcatatcttcttctctttatttttaatctaa 620
Query: 421 tgagctcagttagttctgcccataaatctctgactgtgcgccaatgcactctagcctacc 480
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 621 tgagctcagttagttctgcccataaatctctgaccgtgggccaatgcactctagcctacc 680
Query: 481 aatggccatatctttaaagagaattggcttcctcctatctctcacccatcagctgtcaat 540
|||||||||||| ||||||||||||| ||||| ||||||||| |||||||||||||||||
Sbjct: 681 aatggccatatccttaaagagaattgacttccccctatctctgacccatcagctgtcaat 740
Query: 541 agtgctcgagtcgcttgagcccatcccttctctggttggagtctgtgttggagtggtcac 600
|||||| ||||| ||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agtgctggagtcccttaagcctatcccttctctggttggagtctgtgttggagtggtcac 800
Query: 601 tgttttgaccttgggcag 618
||||||||||||||||||
Sbjct: 801 tgttttgaccttgggcag 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
