BAC Information

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BAC

Clone NameMSMg01-121F14
Chromosome1 (Build37)
Map Location 75,799,570 - 75,942,623
singlet/doubletdoublet
Overlap genenone
Upstream geneWnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121F14.T7 (MSMg01no121_f14.b1)MSMg01-121F14.TJ (MSMg01no121_f14.g1)
ACCAG331485AG331486
length727724
length of high quality
(start - end)
246 (71 - 316)244 (72 - 315)
definitionCHROMAT_FILE: MSMg01no121_f14.b1 PHD_FILE: MSMg01no121_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:05 2005CHROMAT_FILE: MSMg01no121_f14.g1 PHD_FILE: MSMg01no121_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,799,570 - 75,799,815)(75,942,380 - 75,942,623)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTGCTTTCCAGAATGGAGAGAGCTCTTTTGAATCGAATGGTTAT
GTCTTCTTTAATTCAGCTCACCAATGGTACCTGCTACTTAGAATTTGGTG
ACTGTATGCAGGGCAGGCTCCATTTGCTTGTACAGCTGTATCACTCTGTT
TTCCAGAAATGTCCATCTTGAGGTGCAGGTATACACAGCCACCATGTGTC
TTTTACCGAGGCCTTTTGTGGCATCCCAGGTAGCCATGCATTATTTCACG
GGGTGAGCTGATTCTGTTTTTTTTTACACAGTCTTTATGAATATCAGGTT
GTCTCTTTTTTTTTTTGCCCCCCCCCCCCACCCAACCCTCTGAGGACTGT
TGCTCTTGTCTAACGAACTGCATCTCTGAAATGCACAGGATGCTGGTGGT
GGCTGCACAGAGCTCTGCTTATTACTACTCGAGTGTGAGGCTCAGTTTGA
TTCCGGTTTCCTTTCTGAACGTTCTCATATCCACCACAGCTTCGAAGTCA
TCTTATCCGTTCTCTTGAGGTATTATCTGGTTCCTTCATCTGGAAATTAA
AAACCTTATTTCCTTCACGGCTTGCTTTATTGGCGTTGCTTTATCCACCA
CCCCCCTGCTTGTTAGTTAATTTACCCCTTCCAGCCTTCCCCATTTTTTC
CAACTTGATTTGAAGTCTTTTGACGAT
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCCCGCAACTCATAAGCATTGCACTTGTTTGCCATGTGTTT
GGCACCAGCTGGACCCTGGGCACACAGTGTAAATCAGACCCATCTTCTGG
GACTTTAATAACTAGTAGACATGCCAGGAGCTTGCCTGAGTCTAACTGAG
CAAGTACAATCATCTGCTTGGTTTTTCTTTACAACTTTCAGAACAAGACA
GCAGCAGGAAGGGAGGGGAGGAGCTGAGGAGATGCCTAACAGGTGTAAGT
GTTTGCTGTACAAGTGCTAAGATCTGAGTTCAAATGCCCAGAACAGTGTA
AAATCTATATGTATAGAGCCACTCGCCTGGAAGCCCTGTGCTCCTATGGG
GAGACAGAAGATAAAGATAGAAGAAGCCCCAGGGCCAGCTAGCCAGCTGT
GTGCAGTGGTAAGCTACAAGAGAGAGGACAAAAAAACATGCACATGGAAA
GAAAGAGAAAAGATCCCAGTCAAAGGGGCAGAGACACATGTTTTTTATTC
AGCCAAAAGAACAAAAAAATTCCTCTGCTCAGAATGGAAAGAATGCCTTT
TTATATAGCTCACCCTTCCATATTATTCTTGACCATTATCTTTAATCCTC
CTAACAGCCATCTGAAGCATTTCTGGTGCCTTTACTTTATAACCAAGACT
GAACCTCCCCTCACTTACAAATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_f14.b1 MSMg01no121_f14.b1 CHROMAT_FILE:
MSMg01no121_f14.b1 PHD_FILE: MSMg01no121_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:05 2005
         (246 letters)



>mm_chr1_75799370_75800015
          Length = 646

 Score =  445 bits (230), Expect = e-129
 Identities = 242/246 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggagagagctcttttgaatcgaatggttatgtcttctttaattcagctcaccaatggtac 60
           ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ggagagaactcttttgaatcgaatggttatgtcttctttaattcagctcaacaatggtac 260

                                                                       
Query: 61  ctgctacttagaatttggtgactgtatgcagggcaggctccatttgcttgtacagctgta 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgctacttataatttggtgactgtatgcagggcaggctccatttgcttgtacagctgta 320

                                                                       
Query: 121 tcactctgttttccagaaatgtccatcttgaggtgcaggtatacacagccaccatgtgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcactctgttttccagaaatgtccatcttgaggtgcaggtatacacagccaccatgtgtc 380

                                                                       
Query: 181 ttttaccgaggccttttgtggcatcccaggtagccatgcattatttcacggggtgagctg 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 ttttaccgaggccttttgtggcatcccaggtaaccatgcattatttcacggggtgagctg 440

                 
Query: 241 attctg 246
           ||||||
Sbjct: 441 attctg 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no121_f14.g1 MSMg01no121_f14.g1 CHROMAT_FILE:
MSMg01no121_f14.g1 PHD_FILE: MSMg01no121_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:06 2005
         (244 letters)



>mm_chr1_75942180_75942823
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagcattgcacttgtttgccatgtgtttggcaccagctggaccctgggcacacagtgta 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taagcatcgcacttgtttgccatgtgtttggcaccagctggaccctgggcacacagtgta 385

                                                                       
Query: 61  aatcagacccatcttctgggactttaataactagtagacatgccaggagcttgcctgagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aatcagacccatcttctgggactttaataactagtagacatgccaggagcttgcctgagt 325

                                                                       
Query: 121 ctaactgagcaagtacaatcatctgcttggtttttctttacaactttcagaacaagacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctaactgagcaagtacaatcatctgcttggtttttctttacaactttcagaacaagacag 265

                                                                       
Query: 181 cagcaggaagggaggggaggagctgaggagatgcctaacaggtgtaagtgtttgctgtac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cagcaggaagggaggggaggagctgaggagatgcctaacaggtgtaagtgtttgctgtac 205

               
Query: 241 aagt 244
           ||||
Sbjct: 204 aagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)