Query= MSMg01no121_g02.b1 MSMg01no121_g02.b1 CHROMAT_FILE:
MSMg01no121_g02.b1 PHD_FILE: MSMg01no121_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:08 2005
(316 letters)
>mm_chr1_41652912_41653627
Length = 716
Score = 565 bits (292), Expect = e-165
Identities = 307/312 (98%)
Strand = Plus / Plus
Query: 5 gaattctagaatgttctaaaaatatctgtgatgagtatttgtaaggggtgttattgagca 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctagaatgctctaaaaatatctgtgatgagtatttgtaaggggtgttattgagca 264
Query: 65 atctttaagctaccccagagagtataaaataatggtaagaaaaatatctacagtataata 124
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atctttaagctacacaagagagtataaaataatggtaagaaaaatatctacagtataata 324
Query: 125 gcatttacgtaagaaaggggacacataaatagataatggattataggcacaaagatgata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcatttacgtaagaaaggggacacataaatagataatggattataggcacaaagatgata 384
Query: 185 aggataaaatgcataattatattttcaaaaaataaacatgagaacaatgaaaacatttta 244
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 385 aggataaaatgcataattatattttcaaaaaataaacttgggaacaatgaaaacatttta 444
Query: 245 aagtaattacttgtaaagaaatgaatgctcttagaagacttctctgaactgttttacaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagtaattacttgtaaagaaatgaatgctcttagaagacttctctgaactgttttacaaa 504
Query: 305 gatttgactttg 316
||||||||||||
Sbjct: 505 gatttgactttg 516
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no121_g02.g1 MSMg01no121_g02.g1 CHROMAT_FILE:
MSMg01no121_g02.g1 PHD_FILE: MSMg01no121_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:08 2005
(384 letters)
>mm_chr1_41762380_41763162
Length = 783
Score = 727 bits (376), Expect = 0.0
Identities = 382/384 (99%), Gaps = 1/384 (0%)
Strand = Plus / Minus
Query: 1 ttccatgagtttcagagaagaggggccaagggcaaaacagacaccccatttcctattgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 583 ttccatgagtttcagagaagaggggccaagggcaaaacagacaccccatttgctattgtc 524
Query: 61 aagtaggaattgctactgagggagagcctgaactgtgggaagttattcttttctgtcaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 aagtaggaattgctactgagggagagcctgaactgtgggaagttattcttttctgtcaag 464
Query: 121 acaaaacatagtccaacacattttgacagatcttcccccactgctgttgcaatgttcata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 acaaaacatagtccaacacattttgacagatcttcccccactgctgttgcaatgttcata 404
Query: 181 gaagattagcagtatgaagtggctttcaataaaatgtcaacacttctcattacggtgtgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gaagattagcagtatgaagtggctttcaataaaatgtcaacacttctcattacggtgtgc 344
Query: 241 ttaacaatgctatctcactcaggggaaatattgtgactcagatctctaaggtacaatatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 343 ttaacaatgctatctcactcaggggaaatattgtgactcagatctctaaggta-aatatt 285
Query: 301 atgaaatgagagctaatactggattttgaatgaaagtattccagcgtcagagtttcattc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 atgaaatgagagctaatactggattttgaatgaaagtattccagcgtcagagtttcattc 225
Query: 361 tgtcaacaagtttccttccccaca 384
||||||||||||||||||||||||
Sbjct: 224 tgtcaacaagtttccttccccaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 783
Length adjustment: 9
Effective length of query: 375
Effective length of database: 774
Effective search space: 290250
Effective search space used: 290250
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
