BAC Information

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BAC

Clone NameMSMg01-121G20
Chromosome1 (Build37)
Map Location 49,988,498 - 49,988,809
singlet/doubletsinglet
Overlap genenone
Upstream gene2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
Downstream geneEG666962, EG666970, LOC100041993, Tmeff2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121G20.T7 (MSMg01no121_g20.b1)MSMg01-121G20.TJ (MSMg01no121_g20.g1)
ACCAG331545AG331546
length710715
length of high quality
(start - end)
318 (43 - 360)243 (72 - 314)
definitionCHROMAT_FILE: MSMg01no121_g20.b1 PHD_FILE: MSMg01no121_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:12 2005CHROMAT_FILE: MSMg01no121_g20.g1 PHD_FILE: MSMg01no121_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCCAACATGCATCTCTGAAGACTTGACAAGCTAATTGTCATGCTTCAGC
ATGAGAAAACACGGAGAACACGCAAATACAAACTCACAGAAAAACAACAG
TCTTGGATAAGTAACAAGCTTGGAGGAACTAGAATATCTGTTTCCATATT
TTATTCTGAGAAATAATAATCATAACAATGTGATATTTTCAAAAGAAAAG
AAAGAAAAACTATTGCAAGGAAATAAAGGGCACACGAAATGCATTCTATA
AAGTTTTAAATGTGTAGAAAACTTAAACATTATTGTGTAAAATTAACAAA
CATTTAATTATTTTTTGTTCGCCCGCTCTCAGTTAGTTCATAATAATTAT
ACGTAAGAAGATAAGACCAAAAAATATAAAAGACAAATCAATAGAGAATA
GAAGATAGATTGGCCAAACCAGCTCAGTCACTCAACAAGGTGTTTGGGGA
GGAAGTAAGGATTGAAAAGAGAAAGACGATTAAACAACACTATAATATGA
CTTCTGCCAGTGGTGAGGCTGAAGCAAAATTATATATTGTCCAGACATAT
AAAAAGTTCTATGTACGTGCGGACGATATGTGACGCCTCAAGTCAAAGAT
GGAGTAACAAAGGGAGTGCGATAAATGGGAAAAAAAAAAGGAGGTGACCA
CAACCCTCCA
ATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACTCCATTTTTTTT
TAACTGGGTTATTTGATTTTTCTGGAGTCCAGCTTCCTGAGTTCTTTGTA
TATATTGGATATTAGTTCCCTATCAGATTTAGGATTGATAAAGATCCTTT
CCCAATATGTTGGTGGCCTTTTTGTCTAATTGACAGTGTCTTTTGCCTTA
CAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCGATTCTTGATCTTAC
AACACAAGCAATTGCTGTTCTGTTCAGGAATTTTTCCGCTGTGGCCATAT
CTTCTAGGCTTTTCCCCAATTTCTCCTCTATAAGTTTTAGTGTCGGTGTT
TTTATGTGGAGTTCTTTTATCCACTTAGACTTGCGCTTTTTACAAGGAGA
TAAGAATGGATCAATTTGCATTCTTATTCTTCTACAGTTGAGCTAGCACC
ATTTGTTGAAAATGTTGTCTTTTTTCCACTGGATAGTTTTAGCTCCTTTG
TCAAAGATCAAGTGACCAGAGGCGTGTGGGTTCATTTCTGGGTCTTCAAA
TCTATTCCATTGATCTATCCGCTGCTGTACCCCTCTTTTGCTGGTAGGAT
TGTTAGCTTGTACCAAGCATTTGGACTTCAGTCTGGCATGTCTTCCTAAA
ATTGGACATAGTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_g20.b1 MSMg01no121_g20.b1 CHROMAT_FILE:
MSMg01no121_g20.b1 PHD_FILE: MSMg01no121_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:12 2005
         (318 letters)



>mm_chr1_49988294_49989012
          Length = 719

 Score =  572 bits (296), Expect = e-168
 Identities = 308/312 (98%), Gaps = 1/312 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccaacatgcatctctgaagac-ttgacaagctaattgtcatgcttcagcatgag 63
           ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 205 gaattcccaacatgcatctctgaagacattgacaagctaatcgtcatgcttcagcatgag 264

                                                                       
Query: 64  aaaacacggagaacacgcaaatacaaactcacagaaaaacaacagtcttggataagtaac 123
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaacacggagaaaaagcaaatacaaactcacagaaaaacaacagtcttggataagtaac 324

                                                                       
Query: 124 aagcttggaggaactagaatatctgtttccatattttattctgagaaataataatcataa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagcttggaggaactagaatatctgtttccatattttattctgagaaataataatcataa 384

                                                                       
Query: 184 caatgtgatattttcaaaagaaaagaaagaaaaactattgcaaggaaataaagggcacac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caatgtgatattttcaaaagaaaagaaagaaaaactattgcaaggaaataaagggcacac 444

                                                                       
Query: 244 gaaatgcattctataaagttttaaatgtgtagaaaacttaaacattattgtgtaaaatta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaaatgcattctataaagttttaaatgtgtagaaaacttaaacattattgtgtaaaatta 504

                       
Query: 304 acaaacatttaa 315
           ||||||||||||
Sbjct: 505 acaaacatttaa 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 719
Length adjustment: 9
Effective length of query: 309
Effective length of database: 710
Effective search space:   219390
Effective search space used:   219390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)