BAC Information

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BAC

Clone NameMSMg01-121J18
Chromosome1 (Build37)
Map Location 121,403,181 - 121,403,477
singlet/doubletsinglet
Overlap genenone
Upstream geneClasp1, Tcfcp2l1, LOC100041753, Gli2, LOC666838, LOC100041778, Inhbb, Ralb
Downstream geneTmem185b, Epb4.1l5, Ptpn4, LOC100042447, LOC666870, LOC100041863, Tmem177, Gm101, Sctr, Tmem37, Dbi, 3110009E18Rik, Steap3, C1ql2, Marco
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121J18.T7 (MSMg01no121_j18.b1)MSMg01-121J18.TJ (MSMg01no121_j18.g1)
ACCAG331679AG331680
length729724
length of high quality
(start - end)
233 (49 - 281)297 (69 - 365)
definitionCHROMAT_FILE: MSMg01no121_j18.b1 PHD_FILE: MSMg01no121_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:26 2005CHROMAT_FILE: MSMg01no121_j18.g1 PHD_FILE: MSMg01no121_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTCTTTACCGTGAAGAGAAGAAAAGTGGGGCCACTTGTTCC
TATGGTCATGTTTGCAAAGTTAGATTATTTGTTTGTTTGCTTGCTTGCTT
GCTTGCTTGTTTATTGCTGTGTGTGCGCACACTTGAGTGCATATGCACTT
AGAGGCCAGAAGGGGGCATCAGGGGACCTCCATCATTATCCCTCTGGGTA
TTCCTCTTTATGGGGGTGGGGGAGGTCGAGACAGGTTTTCTCTGTATAGC
TCTAACTGTCCTGCAACTTATTTTCTATACCAGTCTGTCCTCGAACTTAT
AAATCTGTTTTTTTTTTTCCCCCCCCCCCCCCCCAATAAAGGTGTGTGCC
ATTTTACTTGGCCTTGTACCCCCAAAAAAAAAAAACATCTCGGCGGGAGC
GCGTTGTTCATGTCCTTTCTTACCCTCTCATACTCCCCCTCTTCTCCTTC
CCCATTTCTTCCCTCTATCCCCCCTCTTTTTCACTTTCCCACCATTTTTT
TTTATTCTCTTCTTCACTTTTTCTTATTTTATCTCCTTTCCACTCCCTTC
CTCTTTTTTCCCTCCCCCCCCCTTTTTTTCCTCTTTCTTTTCTCCTCTCC
TTTCTACCTTTTTTTTTTTCTCTTCCCTCCGCCCCCCCCCCTCCCTTTAT
CTTCTCTTCTTTTTCTCTCTTTCCTGTCT
GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGGAGTAGAGCACGCATCAGCCTTTTCAGAC
AGCTCAGTGCATCCTGTGTGGAAGGGACAGGAACAGCTGTAACACACTCC
AGGAAAGGTGGGCCACAGCCTGGGGGCTACATGGAGGTGGGAGGGGGCAA
GACCAGGGAAATTCTGGCCTGTCTGGTAAACCAATTCTTGACTCTGTCTC
CTGAAGCGTCATTTCACGTGTGAACAGATTATTGTCTAAGCTTGCATCTG
ATCATCGAGGCTTGCCTGAGGAGGAAGTCGGGACATGCTGCAGCCTTCAC
GATGGCATCTGCTGCCCCTCACCGTGGCAGTCTGCATTTGTGCTTTTCTC
ATTAACTCTGTGTGTAACCTCATTTAGCCCTGTGTACCTACAGCTAGAGG
TATTGCTCCTACTGGCTAGCCGGGATCAGAGGTGCATGGAGGCTGAGTGC
TCTCTAATTACATGACTGCTGGTTACGTGGAGGAATTCTTCCGCCCATAC
TTCCTGACTCTGCCAGACTTCAGTGTGATTCTCCCAGGTTATGAACTCCG
CAGAGAGCTGTTTGAAAGTGCCTCCTGTACGGTCTGGAGAGATGACTCAC
CCCCTAAGAGCACTTGTTGCTTCCGTAGAGGACCCCAGTTCAGTTCCCAA
CACCCCTACCATGGTTCAGAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_j18.g1 MSMg01no121_j18.g1 CHROMAT_FILE:
MSMg01no121_j18.g1 PHD_FILE: MSMg01no121_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:26 2005
         (297 letters)



>mm_chr1_121402981_121403677
          Length = 697

 Score =  543 bits (281), Expect = e-159
 Identities = 293/297 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggagtagagcacgcatcagccttttcagacagctcagtgcatcctgtgtggaagggac 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 497 caggagtagagcacgcatcagccttttcagacagcccagtgcatcctgtgtggaagggac 438

                                                                       
Query: 61  aggaacagctgtaacacactccaggaaaggtgggccacagcctgggggctacatggaggt 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 437 aggaacagctgtaacacactccaggaaaggtgggccacagcctcggggctacatggaggt 378

                                                                       
Query: 121 gggagggggcaagaccagggaaattctggcctgtctggtaaaccaattcttgactctgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gggagggggcaagaccagggaaattctggcctgtctggtaaaccaattcttgactctgtc 318

                                                                       
Query: 181 tcctgaagcgtcatttcacgtgtgaacagattattgtctaagcttgcatctgatcatcga 240
           |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 317 tcctgaagcgtcatttcacgcgtggacagattattgtctaagcttgcatctgatcatcga 258

                                                                    
Query: 241 ggcttgcctgaggaggaagtcgggacatgctgcagccttcacgatggcatctgctgc 297
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ggcttgcctgaggaggaagtcgggacatgctgcagccttcacgatggcatctgctgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)