BAC Information

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BAC

Clone NameMSMg01-121N02
Chromosome1 (Build37)
Map Location 178,191,322 - 178,191,607
singlet/doubletsinglet
Overlap genePld5
Upstream geneRgs7, Fh1, Kmo, Opn3, Chml, Wdr64, Exo1, Gm104, B020018G12Rik
Downstream geneCep170, Sdccag8, LOC666235, Akt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121N02.T7 (MSMg01no121_n02.b1)MSMg01-121N02.TJ (MSMg01no121_n02.g1)
ACCAG331833AG331834
length842694
length of high quality
(start - end)
58 (75 - 132)287 (75 - 361)
definitionCHROMAT_FILE: MSMg01no121_n02.b1 PHD_FILE: MSMg01no121_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:43 2005CHROMAT_FILE: MSMg01no121_n02.g1 PHD_FILE: MSMg01no121_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAGGATAGCTAGGGACACACAGAGAAACCCTGTCTTGAAAAA
AGTATGGGTGGGGGATGGGGAGAAGGAGGTAACTTTCCCCTTCCCCCTCT
CCCAATTTTTCTGTCTTTTCCCTTTCCTACATCGTTTTTTCTTCTTATTC
TCGTTTATATCTATCCGACCCCCCCGCCAGCCGCCCTTATACCTACTTAT
TCCCTAAACTGAACAATATAACTCATAATATTAATTCTATAAACGCCAAC
GCTTTAATCGCTGAGCACTTTTATCCCAAATCCGCCCTCGATTCTATTTT
TTTTTTCCCATAATTTATTATATTACCTCATCTAAATTCGTTATTTATTT
ATTTCCACCCCCCCTCCCACTTAATACACATTTTCCCCTATATCATTATG
CGGCGTCGCCCGTAAAACTAACGAAAAACTTTTTATTCCATGTCTGTGGC
GCTGCCACTATTTCACTTATTCACATATCATCTCTACATTAATTATTGCT
CACCCTCACCCCTTTACCCATGTTTACCCATCATATGTCCCCTGACCCTT
ATTATCCACTTCCCACACCTTTATATTTTATCTATCCGACACCTTCCTCT
ATATAACTCTCTTATCTACCCCTTTTTCCACCTCTCCTACATTATCCCCC
TCTCCACTCCGCTCCCTTTTTATTCCTCTTCTCTTTTCTCACGATTACAG
ATCATCACATCACTATTCAAATCCATACCACACCCCCCCCGCGACGCCGG
CACAATTTGATCTCACGTCCTATACCTACCACTCACACAAAG
AATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGACCCTGGACATGCCTGCACGCT
TTCAGTTTGGAACCTTCCCTTACTTTCTGGTGTACCAGAGTTCTCCAAGC
TTGTTTTGTATTTTCCCTACTCCTTCTTACTATGATCTTAGAGACTTAAA
AACAATATTAAGTATTCTTTGGTTTAACTACATCTAATCTCACAAGGCTC
CAGAGAGCAAAGTCTTCAGTTATGTAACATTTCCAATAAAAGCTCAATGG
ACATGTTCTGATGAGGCTGAAGCATCTTTAGAACTGATTCTAGTCTTTAA
TGTATATGTGTTATTTGATGTCCGCCTGCGTAGAGTATAATATTTAGAAA
GGGTACTCTTAGGTGACAATAGGACAGAATGCAGGCACACGCACTTGAAT
CACAAGAGAGGATATAACACTAGCTGCTTTCTAGTTTTAACTCTGTCATG
TTTTTTTCTTTCTTGCCATTGATAAGTGCATAGAACATGTAGCTGAGAGT
AAACCTGTAAAATCCTAAGCCAAGCTCCATAGCTTTAAAGTAGCTGCTCT
AACTGTGTACACGTTCATCGACCTGCCTCGAGGTTTGGATCAGGTGCTTG
GCCGCGTGCTTTGATACCGCCTGCTGACGTTTCTCATTTGCGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_n02.g1 MSMg01no121_n02.g1 CHROMAT_FILE:
MSMg01no121_n02.g1 PHD_FILE: MSMg01no121_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:43 2005
         (287 letters)



>mm_chr1_178191023_178191709
          Length = 687

 Score =  507 bits (262), Expect = e-148
 Identities = 280/286 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaccctggacatgcctgcacgctttcagtttggaaccttcccttactttctggtgta 60
           |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tctgacgctggacatacctgcacgctttcagtttggaaccttcccttactttctggtgta 526

                                                                       
Query: 61  ccagagttctccaagcttgttttgtattttccctactccttcttactatgatcttagaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ccagagttctccaagcttgttttgtattttccctactccttcttactatgatcttagaga 466

                                                                       
Query: 121 cttaaaaacaatattaagtattctttggtttaactacatctaatctcacaaggctccaga 180
           |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 465 cttaaaaacaatattaagtattcttttgtttaactacgtctaatctcacaaggctccaga 406

                                                                       
Query: 181 gagcaaagtcttcagttatgtaacatttccaataaaagctcaatggacatgttctgatga 240
           || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gaacaaagtctttagttatgtaacatttccaataaaagctcaatggacatgttctgatga 346

                                                         
Query: 241 ggctgaagcatctttagaactgattctagtctttaatgtatatgtg 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ggctgaagcatctttagaactgattctagtctttaatgtatatgtg 300


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)