Query= MSMg01no122_a09.b1 MSMg01no122_a09.b1 CHROMAT_FILE:
MSMg01no122_a09.b1 PHD_FILE: MSMg01no122_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:01 2005
(686 letters)
>mm_chr1_31795141_31796226
Length = 1086
Score = 963 bits (498), Expect = 0.0
Identities = 534/546 (97%), Gaps = 2/546 (0%)
Strand = Plus / Minus
Query: 1 ttcagaattggaacttaactgtggctacaaaaagccaaaatccagagtgggaatccattg 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 545 ttcagaattggaacttaactgtggctacaaaaagccaacatccagagtgggaatccatca 486
Query: 61 gtatcagttcattaaccaaagaacaccatcaaagctccaagttcttaccattcttgatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gtatcagttcattaaccaaagaacaccatcaaagctccaagttcttaccattcttgatat 426
Query: 121 ttcgaatcttaactcttaagcttttcttcttacaacatagctgaaacataattctcccta 180
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 425 ttagaatcttaactcttaagcttttcttcttacaacatagctgaaacacaattctcccta 366
Query: 181 ttgctaaacataaataaataagctagaataaataaaatatcttcaaagacatctgtagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ttgctaaacataaataaataagctagaataaataaaatatcttcaaagacatctgtagat 306
Query: 241 agttcatattttgctctacttccaaatccaggcttcttagttacttatgatggttgagaa 300
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 305 agttcatattttgctctacttccaaatccaggcttcagagttacttatgatggttgagaa 246
Query: 301 attaggcaagtgagcactttatatttcatcatatttccatacgtagggaatcgacttggg 360
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 245 attaggcaagtgagcattttatatttcatcatatttccatacgtagggaatcaacttggg 186
Query: 361 gctcacgcatgctaggcaagcactctcttgttaagctataccctaagaaagctttctt-a 419
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 185 gctcacgcatgctaggcaagcactctcttgttaagctataccctgagaaagctttcttaa 126
Query: 420 tcttccagagtgaaaaaaatgagcaatgaggactggaaatataattggctgtctggtcac 479
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 t-ttccagagtgaaaaaaatgagcaatgaggactggaaatataattggctgtctggtcac 67
Query: 480 cagccatcactatttaaggaggataggaaatataattggcagtcatgtcaccagtcagca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 cagccatcactatttaaggaggataggaaatataattggcagtcatgtcaccagtcagca 7
Query: 540 ctattt 545
||||||
Sbjct: 6 ctattt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no122_a09.g1 MSMg01no122_a09.g1 CHROMAT_FILE:
MSMg01no122_a09.g1 PHD_FILE: MSMg01no122_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:01 2005
(618 letters)
>mm_chr1_31645451_31646468
Length = 1018
Score = 1172 bits (606), Expect = 0.0
Identities = 615/618 (99%)
Strand = Plus / Plus
Query: 1 aatgttaaaaggtcatactttaatatgaaaagactgtatgatcatttcctaaacaattat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgttaaaaggtcatactttaatatgaaaagactgtatgatcatttcctaaacaattat 260
Query: 61 cttttgagattgtcatgtacaaaaattaaagtatccaaggaatatttaaaaaatatcgat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttttgagattgtcatgtacaaaaattaaagtatccaaggaatatttaaaaaatatcgat 320
Query: 121 cattctatcaagctactttgtgatagtggatttatcaacaacttactatagaacagtcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattctatcaagctactttgtgatagtggatttatcaacaacttactatagaacagtcaa 380
Query: 181 ttaataataattctacttttgtagatttaattgtaatatgaaatccacatagatatactc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaataataattctacttttgtagatttaattgtaatatgaaatccacatagatatactc 440
Query: 241 cattcttccactcactagtttagttacataaatatcttcattagtttataaccaatcatg 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 cattcttccactcactagtttagttacataaagatcttcattagtttataaccaatcatg 500
Query: 301 gtaccttttttctaataactttatatatatggaaatgtatatgcaagtatatgtattttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtaccttttttctaataactttatatatatggaaatgtatatgcaagtatatgtattttc 560
Query: 361 ctcttttcacattgtttataaaaaaatgtacaaagtgcagaaaaaaggctggtctttgct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcttttcacattgtttataaaaaaatgtacaaagtgcagaaaaaaggctggtctttgct 620
Query: 421 actttgcaggttcttctttttcttaccttttatctccctggccccagtttcaatccataa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actttgcaggttcttctttttcttaccttttatctccctggccccagtttcaatccataa 680
Query: 481 caaaagataaataggggagaggaattaggagattccttgaatctcatttctctcctttcc 540
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caaaagataaataggagagaggaattaggagattccttgaatctcatttctctcctttcc 740
Query: 541 tttcttctttgaccatggctactaggttactaacaaatcacaaccaacttccatcaatga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttcttctttgaccatggctactaggttactaacaaatcacaaccaacttccatcaatga 800
Query: 601 caaccaccacccaccaga 618
||||||||||||||||||
Sbjct: 801 caaccaccacccaccaga 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
