Query= MSMg01no122_a21.b1 MSMg01no122_a21.b1 CHROMAT_FILE:
MSMg01no122_a21.b1 PHD_FILE: MSMg01no122_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:05 2005
(632 letters)
>mm_chr1_46992873_46993901
Length = 1029
Score = 1048 bits (542), Expect = 0.0
Identities = 583/598 (97%), Gaps = 3/598 (0%)
Strand = Plus / Plus
Query: 1 gtttgaaacaagcacctttacttaagcccctttagaaagaggtgttgatagaagaaactt 60
|||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||
Sbjct: 201 gtttgaaacaagcacctttactcaagcacaggtagaaagaggtgttgatagaagaaactt 260
Query: 61 tgctagtgcagcttttagctctggcatgtgggggcgatgatacctgacagtgtgtttgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctagtgcagcttttagctctggcatgtgggggcgatgatacctgacagtgtgtttgag 320
Query: 121 ggcactttggcagtgtatgtcaagatggcaaatctgagcacactttgacccagcaactta 180
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcactttggcagtgtgtatcaagatggcaaatctgagcacactttgacccagcaactta 380
Query: 181 ataacgagtactttatatgtgcacatccattgcagcaatgttagcaagcgttagaaccac 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 ataacgagtactttatatgtgcacatccattgcagcaatgttagcaagtgttagaaccac 440
Query: 241 ctgagtgtttgtcaatatgagactagcttcctaacttgtacattcagctgtatattttgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgagtgtttgtcaatatgagactagcttcctaacttgtacattcagctgtatattttgt 500
Query: 301 aattaagggagactgaggcagatttgcatctgcagttttgaaaagatcttaaagacatgt 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattaaggaagactgaggcagatttgcatctgcagttttgaaaagatcttaaagacatgt 560
Query: 361 ctttcaacaagataaaaagcagtatgcctggcatgattgcaagtaaaacaaagaaagtgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttcaacaagataaaaagcagtatgcctggcatgattgcaagtaaaacaaagaaagtgt 620
Query: 421 gcaaaatctggactgtaatacacaacatagttttgtattttatatgtaccaaacagttag 480
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 gcaaaatctggactgtaatacacaaaatagttttgtattttatatgtaccaaacagttag 680
Query: 481 taactggttaatttgttgggagagagagtagagagagtgttcgaacagcaacaacaacaa 540
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 681 taactggttaatttgttggaagagagagtggagagagtgttcgaacagcaacaacaacaa 740
Query: 541 caatctatttttatttaatacttaaaaaactccacaagtatatataaacttttttttt 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ---tctatttttatttaatacttaaaaaactccacaagtatatataaacttttttttt 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1029
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1019
Effective search space: 633818
Effective search space used: 633818
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no122_a21.g1 MSMg01no122_a21.g1 CHROMAT_FILE:
MSMg01no122_a21.g1 PHD_FILE: MSMg01no122_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:05 2005
(758 letters)
>mm_chr1_47094707_47095863
Length = 1157
Score = 1203 bits (622), Expect = 0.0
Identities = 666/692 (96%), Gaps = 19/692 (2%)
Strand = Plus / Minus
Query: 85 acaaagaggaggttgtgctcagtaaaagccagagagagccacagagtctcttccttagtt 144
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1157 acaaagaggaggttgtgctcagtaaaacccagagagagccacagagtctcttccttagtt 1098
Query: 145 ttcaaactggagaaggttccatggctagtctataaatgcattttattgtactatactgac 204
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1097 ttcaaactggagaaggttccatggctagtctataaatgcattttgttgtactatactgac 1038
Query: 205 atttactgagtgtttcatcttataac------------------cttataattataaaaa 246
|||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1037 atttactgagtgtttcatcttataaccttataattataaaaagtcttataattataaaaa 978
Query: 247 gtaaaatattttttaaaaatgtaagtgctgacaagcatctcaaaagtttcatatgaatta 306
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 977 gtaaaatattttttaaaaatgtaagtgctgacaagcatctcagaagtttc-tatgaatta 919
Query: 307 agcacaaattattatggtttgtgttgtactgtgactcctttgtaagcaattgagccaagg 366
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 agcacaaattaatatggtttgtgttgtactgtgactcctttgtaagcaattgagccaagg 859
Query: 367 tttcatacctgctaagcatcactctctcacgacctaaacccctattcctaccatcattta 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 tttcatacctgctaagcatcactctctcacgacctaaacccctattcctaccatcattta 799
Query: 427 ttttgtttcagaaaagctttgatggacattattagtgaccatgactggatcctttgaaaa 486
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 798 ttttgtttcagaaaagctttgatggacattatgagtgaccatgactggatcctttgaaaa 739
Query: 487 cataggcaaaatggaaagttttcataaagaaaatcggccttgtaattatagctcagaaaa 546
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 cataggcaaaatggtaagttttcataaagaaaatcggccttgtaattatagctcagaaaa 679
Query: 547 ctgtatctttaatacactggacctcctcattgttaaatcttcagttgtgttataaataca 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ctgtatctttaatacactggacctcctcattgttaaatcttcagttgtgttataaataca 619
Query: 607 cttggtttgggtttcatgttacttaaaagagattcataaatgtataattggtgatatcat 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cttggtttgggtttcatgttacttaaaagagattcataaatgtataattggtgatatcat 559
Query: 667 ttattgcctggaaacaccattgctagccagcttacttctccacccaataatttgttaagt 726
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttattgcctggaaacaccatggctagccagcttacttctccacccaataatttgttaagt 499
Query: 727 gtactcttacaagcaaatttctcactacatac 758
||||||||||||||||||||||||||||||||
Sbjct: 498 gtactcttacaagcaaatttctcactacatac 467
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 758
Length of database: 1157
Length adjustment: 10
Effective length of query: 748
Effective length of database: 1147
Effective search space: 857956
Effective search space used: 857956
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
