Query= MSMg01no122_e23.b1 MSMg01no122_e23.b1 CHROMAT_FILE:
MSMg01no122_e23.b1 PHD_FILE: MSMg01no122_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:37 2005
(654 letters)
>mm_chr1_11554934_11555991
Length = 1058
Score = 1135 bits (587), Expect = 0.0
Identities = 639/659 (96%), Gaps = 6/659 (0%)
Strand = Plus / Minus
Query: 1 actactataaaattttaaaaaataataaaataaaaataaaaagtcttgtatttacaggtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 actactataaaattttaaaaaataataaaataaaaataaaaagtcttgtatttacaggtg 735
Query: 61 tctgaacttggatcttttttaggtcaagaaaattcaaaactgtgagttttatggccacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tctgaacttggatcttttttaggtcaagaaaattcaaaactgtgagttttatggccacac 675
Query: 121 gggggtgctgcgggacagtgatgcttccgcgcgactggcagagggtccgggtcttcttga 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 674 gggggtgctgcgggacagtgatgcttccgcgcgactggcagagggtctgggtcttcttga 615
Query: 181 aagcctgggctcctctcccccctccttgaatatcaaatatgaacggcatcaagatgaaag 240
||||||||| |||||| ||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 614 aagcctgggatcctctaccctctccttgaacatcaaatatgaacggcatcaagatgaaag 555
Query: 241 tcatcaagattttgttcactgacaaaaaaatcttttaaaatatcttttcaaaaagaaaaa 300
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 554 tcatcaagattttgttcactgac-aaaaaatctttttaaatatcttttcaaaaagaaaaa 496
Query: 301 ttactgtttccctc-----aaataaacattgtaaattttcatgaagttttcagaaacaag 355
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttactgtttccctcaattgaaataaacattgtaaattttcatgaagttttcagaaacaag 436
Query: 356 tattagattaagtgactaaaatgagcactgttgtgtagatttgtggattggactaccgtt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tattagattaagtgactaaaatgagcactgttgtgtagatttgtggattggactaccgtt 376
Query: 416 ccctgcctcctcgcccggttctgagaagaaagcgtgtgggaagggatgtacattggaggt 475
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ccctgcctcctcgcccagtactgagaagaaagcgtgtgggaagggatgtacattggaggt 316
Query: 476 ggaaggcacctgaccacgtgtcaaggcagacctaagtcactttcgtgatatccaaatcca 535
|||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 315 ggaaggcatctgagcacgtgtcaaggcagacctaagtcactctcgtgatatccaaatcca 256
Query: 536 tttcagtgaagatacaaccagtgcagggctggacctgagccagttggttgcccacatgtg 595
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 255 tttcagtgaagatacaaccagtgcagggctggacctgaaccagttggttgcccacatgtg 196
Query: 596 gatccaggtcctctatctgagctgccttgcctggcttcagtgagaccatgggggttggg 654
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 195 gatccaggtcctctatctgagctgccttgcctggcttcagtgagaggatgggggttggg 137
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1058
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1048
Effective search space: 674912
Effective search space used: 674912
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no122_e23.g1 MSMg01no122_e23.g1 CHROMAT_FILE:
MSMg01no122_e23.g1 PHD_FILE: MSMg01no122_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:37 2005
(737 letters)
>mm_chr1_11493273_11494409
Length = 1137
Score = 1377 bits (712), Expect = 0.0
Identities = 732/740 (98%), Gaps = 4/740 (0%)
Strand = Plus / Plus
Query: 1 caattcaatctgtgtctttactgttaaagagagaagtgtgattaggttacttctgaaata 60
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 201 caattcaatctgtgtctttactgttaaagagagaggtgggattaggttacttctgaaata 260
Query: 61 gaaaacaaaacaaaacaaaacaaacaaacaaacacacaaaaaaccgtgagttctccagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaacaaaacaaaacaaaacaaacaaacaaacacacaaaaaaccgtgagttctccagtg 320
Query: 121 gcctagaagggtctctacatcaggctaaaaaaaaaaaaacattcaaaaatggctcttctc 180
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 321 gcctagaagggtctctacatcaggctgaaaaaaaaaaaa-attcaaaaatggctcttctc 379
Query: 181 tcagcatgcatggagacttgtgtgctgcatctgaacccatttctgctgatcccagatatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcagcatgcatggagacttgtgtgctgcatctgaacccatttctgctgatcccagatatt 439
Query: 241 ataggtctgcttgaatgtacaatcagacaagaaaaagttgtcctcactatgcatcatgtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ataggtctgcttgaatgtacaatcagacaagaaaaagttgtcctcactatgcatcatgtt 499
Query: 301 ttctagtttaaaaaaaa---aaagagagagagaaaagaaaggaaccttagatgaaatgcc 357
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttctagtttaaaaaaaaaagaaagagagagagaaaagaaaggaaccttagatgaaatgcc 559
Query: 358 tgacattagggagagggatcttataaagcccacttctaccaggtagactggacagcaagt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgacattagggagagggatcttataaagcccacttctaccaggtagactggacagcaagt 619
Query: 418 gagaggtagggttgccattccaaagtcacaactttgacccaaaattgttcctgtttgaaa 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gagaggtagggttgccattccaaagtcacaactttgacccaaaattgttcctgtttgaaa 679
Query: 478 gaattacagggatggaaatggagaggaagctgaggaaaagaaggtccagcaacaagtcca 537
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 680 gaattacagggatggaaatggagaggaagctgaggaaaagaaggtccaacaacaagtcca 739
Query: 538 aagtgggatccagctcaaggggaggtctcaagacctgacactattattgaagttatggag 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aagtgggatccagctcaaggggaggtctcaagacctgacactattattgaagttatggag 799
Query: 598 agctcacaaaaagggatctatcatgaatgctctccaaaagacccaacaagcagctgaaag 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 agctcacaaaaagggatctatcatgaatgctctccaaaagacccaacaagcagctgaaag 859
Query: 658 agtcagatgcagatatttgcacccaaccaatggaccaaagcagctgacccctgttgttga 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 agtcagatgcagatatttgcacccaaccaatggaccaaagcagctgacccctgttgttga 919
Query: 718 attagggaaggctgaacgaa 737
||||||||||||||||||||
Sbjct: 920 attagggaaggctgaacgaa 939
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 737
Length of database: 1137
Length adjustment: 10
Effective length of query: 727
Effective length of database: 1127
Effective search space: 819329
Effective search space used: 819329
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
