CTCTTTTNNNNAAACAATGCGCGCTAXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTACCATCTACTACCCTTTAACACTCCACCTTGAGGTTCAG
GTGCATCTTCCCCCCTCTGGGCCCTAGCTTAGACATATGTCTTAGGGTAT
AATTGCTGTGAAGAGACACCGTGATGATGGCAACTGTTGTAAAGGAAAAC
ATTTAATTAAGTCTGGCTTACAGGTTCAAAGGTTTAGTCCATTGTCATGA
TTGGGGTAAGCATGGCAGTTTGAATGGTAGCTCACAGGCAGACATGCTAT
TGGAGAAGGAGCCAGGAGTTCTAAATTGATCATCACACAACAGGAAGAAA
ATGTTAGCCATTGGTACTGGCTTGAACTTCTGAAACCTCAAAGCCCATCT
TCAGTGAAACACTTTTTCAACAAGGTGACATCTAATGCCACTTTCTAAGC
ATTCAAATGCATGAGACTATGTGAGACAGTCTTATTAAAGCCTATACAAT
GTGGCTATTTCTTATCTTTTGTCTTTGCCTTTTAGATGCTAGCCAGATCA
TAACTATGGTTGTAAATTATTTGATCAGCAGTGATGGCTATCTTGGTTAA
TCAATGTTACTTCATAGGGAATCATATAACCTGGCTACACTTGTGAAGAA
TTATTTTCTGATTGGATTATTTGAAACTTGAAGATCTACACTGAATCTGG
ACTATACCTTCTAGTGGCATTTCAGACAAAAGGACAAGGAAGAAGGAAAC
TTTTCATTTTGCATGCTTGGTCTTACTCTTGTTTATCTATTTTCTTGCTC
CAGCATCCCCCACTGACATCAGAATAAAAGTCTTTGAGATTGCATGATAG
GCAAAGTCCAACAGTATGACTGTGGCTAAACTGTGAACAGCCTGAAAACA
ACCCAGGTCTTATGGGAACTAAAGCAACCTTACTGGGAATTGTTTTGGGG
C

CTTATTTTNNNNTATCAAGTGAGGCTGGGGCCXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCATTCCCTCTATATCAAATTAAAT
AGCCAAAGAAAACTCTGCCTGTTGAGAGAAACTGAGCAATTTCTGTGAGC
TAAAGGATCCACAAGATTCTCTGCTACATTTGGGGATTATTTGATGGAGC
CAACTACAGGCTATGCAGGGAACTTCAGAGATACAGTTCCAGTGAGTTGC
CATGTAAGCTTCTTGGTGGTGCTGTGCCTTTCTAGCCTTGGTATTGTAAG
TAATCCCAATAAACTCACTGGTTCCTTAAGCCAGACTCAGGTACAACAGT
CTATGTTCTATCTGCAATGAATAGGCAGACATTTGCATATATCTATCTAG
GTAAAGTCACACAACAGAGTTAATATATTCTTACGTTTCAACTCTCAGTG
GGTTGTCTGTTGAGCACATATAGTTGTTTGGCATTGTCCAAATAAGGGTG
GGTTGCAAAAGGTAAGATCATTTCTAATTTGACCATTTACTCTTAAGAGC
ACACCAATACAAACATCCCTAAATATCTGTATTGAGCTGCTCTTGAACCC
TCTTTTGGGGGCAATAACTTTCTGAATGTCTACCACACCAATTTGAGTAT
AAAATGTCTCTTTCCTAAGTGTTAATTTTTGGAGGTTGTGCTGATATTTT
GACTGTTGGTACATACTGGGTTCTGGTCCATACCTTCCAGCTTGCATGGG
AGAACTGAAATTTCCTCCCAATTTGAAATGACAGACAACCTCACATTGAC
AAATGCCTTTTTAATGGAAGTATACTCTGTTACCTCTAGATGGGAGCTTG
AAAGCCAGTCTTTGCTTCCCTATAATACCTTATCCTATTCCACTTAAGGG
AAAGCAGCCATGTAAGTTCCCCTAACCTAAAGGGATTTTCTCATGGCTTG
GATCTGTGCAAAATATTTGTATAAGGGAAAAAAATTTCAGGGTTTTCCCG
GGNTTGGGAAAGGTGGAAAATTCC

Query= MSMg01no122_g03.g1 MSMg01no122_g03.g1 CHROMAT_FILE:
MSMg01no122_g03.g1 PHD_FILE: MSMg01no122_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:46 2005
         (729 letters)



>mm_chr1_114873421_114874549
          Length = 1129

 Score = 1359 bits (703), Expect = 0.0
 Identities = 721/727 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   attccctctatatcaaattaaatagccaaagaaaactctgcctgttgagagaaactgagc 62
           ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||
Sbjct: 929 attccctctatatcaaattaaatagccaaagaaaactctggaagttgagagaaactgagc 870

                                                                       
Query: 63  aatttctgtgagctaaaggatccacaagattctctgctacatttggggattatttgatgg 122
           ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 869 aatttctgtgagctaaatgatccacaagattctctgctatatttggggattatttgatgg 810

                                                                       
Query: 123 agccaactacaggctatgcagggaacttcagagatacagttccagtgagttgccatgtaa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 agccaactacaggctatgcagggaacttcagagatacagttccagtgagttgccatgtaa 750

                                                                       
Query: 183 gcttcttggtggtgctgtgcctttctagccttggtattgtaagtaatcccaataaactca 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 gcttcttggtggtgctgtgcctttctagccttggtattgtaagtaatcccaataaactca 690

                                                                       
Query: 243 ctggttccttaagccagactcaggtacaacagtctatgttctatctgcaatgaataggca 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ctggttccttaagccagactcaggtacaacagtctatgttctatctgcaatgaataggca 630

                                                                       
Query: 303 gacatttgcatatatctatctaggtaaagtcacacaacagagttaatatattcttacgtt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gacatttgcatatatctatctaggtaaagtcacacaacagagttaatatattcttacgtt 570

                                                                       
Query: 363 tcaactctcagtgggttgtctgttgagcacatatagttgtttggcattgtccaaataagg 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tcaactctcagtgggttgtctgttgagcacatatagttgtttggcattgtccaaataagg 510

                                                                       
Query: 423 gtgggttgcaaaaggtaagatcatttctaatttgaccatttactcttaagagcacaccaa 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gtgggttgcaaaaggtaagatcatttctaatttgaccatttactcttaagagcacaccaa 450

                                                                       
Query: 483 tacaaacatccctaaatatctgtattgagctgctcttgaaccctcttttgggggcaataa 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tacaaacatccctaaatatctgtattgagctgctcttgaaccctcttttgggggcaataa 390

                                                                       
Query: 543 ctttctgaatgtctaccacaccaatttgagtataaaatgtctctttcctaagtgttaatt 602
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ctttccgaatgtctaccacaccaatttgagtataaaatgtctctttcctaagtgttaatt 330

                                                                       
Query: 603 tttggaggttgtgctgatattttgactgttggtacatactgggttctggtccataccttc 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tttggaggttgtgctgatattttgactgttggtacatactgggttctggtccataccttc 270

                                                                       
Query: 663 cagcttgcatgggagaactgaaatttcctcccaatttgaaatgacagacaacctcacatt 722
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cagcttgcatgggagaactgaaatttcctcccaatttgaaatgacagacaacctcacatt 210

                  
Query: 723 gacaaat 729
           |||||||
Sbjct: 209 gacaaat 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 729
Length of database: 1129
Length adjustment: 10
Effective length of query: 719
Effective length of database: 1119
Effective search space:   804561
Effective search space used:   804561
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)