TCCCTTNTTTTAACACTGGGCGCTATAGACTCCTATAGGGAGAGGATCCG
CGGAATTCCAGGCCAGTCTCGGCCATAAAGGGAGAGAGNAAGGGAGAATG
AGAGAAAGGGACCTTGAGAAGGGGGAATGGNAAGTAGAGTNNANGTGGAG
GATNANTGAGGAGGTTCTACACTAACTTCTTCCCTAAGCATTTTTTCTTC
AGTGCCAGGCACGTCCTAGGCACCATGGGTTCAGATCTGTCAAATGGGGT
GTGAGACCTGAGGACTGGCAGCCGTGCACATTAGCTCTGAGAGCAAGACA
AGCTGCTGCCCTTGATGCCCCCGCGCCCTCTGCTGTCCCAGTTCCCAGCC
TTGGAGTCTTTCACTCCCACAGAGGGCCAGCTTCTCTAGAGTTTTTTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCGTGTACACATGC
GTGTGCACGTGCACTGTTTTCCCACCCCTAGGGATTTTTGCTTATAGCAT
AAAGAAGCTCAACACCTTTGCATAAGGGTAATGTAGGCAGTTGCTGAGCT
AACCGTGATGGTTGCCTTAGCTGATCCTACAGGACTGATGCGATCTCTGA
TTATACACTTTATGGTCCCTCGAAGCATCTCGTCTAGGAAGTCACACAGT
TTCATCTGAATGTCTGGTCAGGGAGCTTACTCTGTTTTCGGTAGGTCCTT
TGTCACTGTGTACAGTTACAGGTGTGTATTAACCGCGTGTTATGTATGTT
CTGGCCTTTTGCTTTCCTTAGTTTATGCCTCCTGATGTTCCTGCTTTGGG
CTTATGTATCTTGTTATATCCTCTTTGTTTCCAATTATCCCAATTCTTTT
CCTCTTTAATACTAACAATTGTTTTTGGTAACTATTCTCCACTTTTCTAT
GTAACTTTGAATTCCCTTATAAATCTTTTTGTGTTCTATTTGTCTTTAAA
TAATAGTCCTTTGATGCATATTAATATCGCCCCATCTTTATTATCTTTTA
CTACAACAGTGCGATAACTCATT

CAGTACTTCGTTAAACATGGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCCCTGATCCATGGAG
TGAATTTCAGGACCCCCTTAAAAACCCAGAAACCTCGTCTCAAAAAAAAA
AAATTTTTTTAATTTAATTTGGAAATATAAAAACATTCTTTTATACCTGT
CCATAGAGTTCAGTCCACATGTTAGAGATGTTCATTTTTATATTCTAAAT
TACATATTGCCATTTTATGAGTCACTAATTACAGGAATAATTTTATGTAA
TGTTTTTGAGGTTTTATTTATTCTTATTTTATGTGTATGTAGGTGTTTGC
TTGAATGTGCCAGCTGTGCTCTATATGTATGTAATGTCCATGTCATTCTT
AAGAGGGCGTTGGATCCACTGGGCCTGGAGTCAGAGACACTCGTGAGCCG
TGTGGGTGCTGGGAATTGAACCCAGATCTGCTGAAAGAACAGCCAGTATT
CTTAGCTGTTGAAGCTCCAGCTTTAGGTAATATTTTAGAGAGCTTATAGA
CCTCATACTGACAGAATCTGCTGTAAATTCTGGAATGGACTGTGGTTGAC
TAGCGGAAGCACTTGATATAATAGAAAATATATTATATTTTAAAATCAGC
TGCTCTGAGTGAATTTTATCTTTACATTTTTAAAAACTATGTGTACATGG
GGTGTATATGGTATATGCACTTGGGTGCATATGTCACAGAGATGTGTCAG
ATGCCCCTGGAACTGGAGTTACAGGTGGTTGTAAGCTGTCAAGGACTGAA
CTTAGATCCTCTTTAAAAACAAGCCGTAATGCACTCCTTACCTGCTGAGC
TATCTTCTCTAGCCCCCACAAGCTTTTGTTTGTTTTTGGACGTTTGGAAT
AAATGGTGGTTAACCATTTTGCTAAAAGTTTAACTTTAACCCCTCCCCCT
TTTGCCCCGGTTAAAGGTGGAGGGGCTATTTTTTTTAAAAGTAAATTAAA
ATGCACTCTGGTGCCATATAAAGGTGGTCATCGTGTGGGCCCAAAAGGA

Query= MSMg01no122_k03.b1 MSMg01no122_k03.b1 CHROMAT_FILE:
MSMg01no122_k03.b1 PHD_FILE: MSMg01no122_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:18 2005
         (269 letters)



>mm_chr1_157635387_157636055
          Length = 669

 Score =  455 bits (235), Expect = e-132
 Identities = 259/269 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggggaatggnaagtagagtnnangtggaggatnantgaggaggttctacactaacttctt 60
           ||||||||| |||||||||  | ||||||||| | |||||||||||||||||||||||| 
Sbjct: 469 ggggaatggcaagtagagtccacgtggaggatcactgaggaggttctacactaacttctg 410

                                                                       
Query: 61  ccctaagcattttttcttcagtgccaggcacgtcctaggcaccatgggttcagatctgtc 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ccctaagcattgtttcttcagtgccaggcacgtcctaggcaccatgggttcagatctgtc 350

                                                                       
Query: 121 aaatggggtgtgagacctgaggactggcagccgtgcacattagctctgagagcaagacaa 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 349 aaatggggtgtgagacctgagggctggcagccgtgcacattagctctgagagcaagacaa 290

                                                                       
Query: 181 gctgctgcccttgatgcccccgcgccctctgctgtcccagttcccagccttggagtcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 289 gctgctgcccttgatgcccccgcgccctctgctgtcccagttcccagccttagagtcttt 230

                                        
Query: 241 cactcccacagagggccagcttctctaga 269
           |||||||||||||||||||||||||||||
Sbjct: 229 cactcccacagagggccagcttctctaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no122_k03.g1 MSMg01no122_k03.g1 CHROMAT_FILE:
MSMg01no122_k03.g1 PHD_FILE: MSMg01no122_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:19 2005
         (313 letters)



>mm_chr1_157461270_157461982
          Length = 713

 Score =  565 bits (292), Expect = e-165
 Identities = 307/312 (98%), Gaps = 1/312 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaacctcgtctcaaaaaaaaaaaa-tttttttaatttaatttggaaatataaaaacatt 59
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 200 gaaacctcgtctcaaaaaaaaaaaattttttttaatttaatttggaaatataaaaacatt 259

                                                                       
Query: 60  cttttatacctgtccatagagttcagtccacatgttagagatgttcatttttatattcta 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cttttatacctgtccatagagttcagtccacatgttagagatgttcatttttatattcta 319

                                                                       
Query: 120 aattacatattgccattttatgagtcactaattacaggaataattttatgtaatgttttt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aattacatattgccattttatgagtcactaattacaggaataattttatgtaatgttttt 379

                                                                       
Query: 180 gaggttttatttattcttattttatgtgtatgtaggtgtttgcttgaatgtgccagctgt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gaggttttatttattcttattttatgtgtatgtaggtgtttgcttgaatgtgccagctgt 439

                                                                       
Query: 240 gctctatatgtatgtaatgtccatgtcattcttaagagggcgttggatccactgggcctg 299
           ||||||||||||||||||||||||||||  |  |||||||||||||||||||||||||||
Sbjct: 440 gctctatatgtatgtaatgtccatgtcagccagaagagggcgttggatccactgggcctg 499

                       
Query: 300 gagtcagagaca 311
           ||||||||||||
Sbjct: 500 gagtcagagaca 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)