BAC Information

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BAC

Clone NameMSMg01-122K09
Chromosome1 (Build37)
Map Location 135,203,444 - 135,357,057
singlet/doubletdoublet
Overlap geneGolt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13
Upstream geneKlhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6
Downstream geneLOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122K09.T7 (MSMg01no122_k09.b1)MSMg01-122K09.TJ (MSMg01no122_k09.g1)
ACCAG332453AG332454
length1,0331,013
length of high quality
(start - end)		663 (83 - 745)688 (123 - 810)
definitionCHROMAT_FILE: MSMg01no122_k09.b1 PHD_FILE: MSMg01no122_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:21 2005CHROMAT_FILE: MSMg01no122_k09.g1 PHD_FILE: MSMg01no122_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,356,399 - 135,357,057)(135,203,444 - 135,204,130)
sequence
TTTCTCTNNTNTACAGTGCGCGCTATAXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAACCTATGAGCCTATCATAAAAATTCTCATTCAATAAAAG
AATACCACAATAAAACATAGGAGGAGCCTGTCCTTCTTGCTCAGTCTGAG
ACTTAGAGCAGTGACTGGGGTGACAAGGGAAGCCATCCAGTTCTCATCTG
CCGTCACTTCTCCACAGTCCACAACCCCTGTGCTGCTTCAGGGGTCCTTT
GCAGTTCTGTGCTCCCCACACTCTTCCTTCTTCTAGAACATTCTCCCCTT
TCTTCCTCAGGTGACAGACATGCTCTCTTTGAAGAAAGTTCAGTGCCTTT
TCTTCCCCCATCTGGGGTGGAAGTGCTACACTGCATAGGACTCTGCACAG
GACTCCAACACCTTATTCTGCAATGGTGCATGGTCTGCTGAAGAGTCCAG
ACCCTGTCATATGTGCATCTGTGAAGGGCTGGCTTGGGCCATGACTCCTT
CACTAACATATCCAGGACTCAGCCAGTGTTTACTGAATGGGCTGGGACTG
GATACCACCATGTCCTTACCCCCAGGAGATGTTATACTAAGCTAACATAG
TACAGCTGTTTTATGGGATTTTTTTGGGGGGGGGGCTGTCAATTTTTTAA
AATTCTTAAGATAGGAGTGGTAGAAAGAGTGCTATGGAAACCTACAACTA
AAGAAACTTCTTAAAATATATATAATATATAAAAAGCTTAAATGGGGCTT
CCCTATAGTGGGGTGGCAATGTCCTACTAGACACCACAGGCTAGCAAAAT
AGAATCCCAGAACCCAAGGATGGGTAACCCCCTTATGGTATGCTTTAAAA
TGTTTTTGGCCCAATTAAGGTCCCCTTAATCCTCCCCAACAATTTATTGG
TCAAATGCCTTCTTTGCTTTGCCCCTCTCAAAAAAACTTGGATGGGTCCA
AAACTCTACTTTTTATTCCCGAAAAGAAAACAATCCGTTTAAATACCTTT
GGGTTAACAAGGCCTCTCAGTGGAAGAGAAAAA

CACCCTTTTTNNAAACAAGTGAGGCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCCTTAATTTCCATCATGGCAGAGTG
TAACGGTGACATTTCCTTGGACCTGAGCCAGGCATGATGGTTGGAAGGAT
GAATGTTTAATTAGCTTCTTCCTTTTCTAGCTAAGGCTTTGCTGGAAGAC
TTGCTGGCCAGCCAGGCAGCCTCTAGGGCGCCCCCTCCTGCTCACAACAT
GCATCACTCTTTCCCATGGTGGCCAGTTGAGAAAGCAGCCACAGGCTGAG
GTTCAGTCTGGCTGTTCTATGGCCAGACTCCTTCCTCGGGTTGGCCTTGT
GGAGGTCCCTCCCCAGGAGGGTGGATGGTGGACTCCCAGCTCCTGTGGCT
AGAAAATCAGACCAGGAGTGTCCACTTCAGAGGTCTCTTGTCCCTGCTCC
TGGGTGGGCTACATTGGAAGTGATGGAAAAGAGTATTCCTAGCTGATATT
TGATATCTTTTGGGAGCAGTTTAAAAGCATAATTTTTAGATATAACAGCC
TATTAATAGAAGACTAATAACAACGATAGTAATTTATATAACTATACTAG
AATGTTAATAGCAATAACTATCTCATTAGTGCTTATATGATTAATCAGGG
TGCCCAGATCAATGCACTGGTATATGCTTCTCAGTAATGCCCGCCGCCCC
AGTGTGGTAGGTACTATTCTTAGCTAAGAAACTGAGGTACAGAAATTTTA
AATAGAAACCCTAAGGTCTCATGCATGACATTAGAGCTTTCCGGTTTTAA
TGGCTGTCGTACTGCCCCCTAGTGGGTGTTTAGAAGATTTGCAAGAGAGC
CTTTGGCTGGTTCAAGCATGGACAGCAAACCCCTGGGTAGCTTTTCCGTT
GTTGCACTGAGCAGCACAAACATCCAAAATAAAAATTGCCCTTGGCCCCT
CAATCAAAGCCTCTTTTAAAGGGGCCAATGGCCTGAAACTTAAAAAAAGC
GCCTTTCTTCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_k09.b1 MSMg01no122_k09.b1 CHROMAT_FILE:
MSMg01no122_k09.b1 PHD_FILE: MSMg01no122_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:21 2005
         (663 letters)



>mm_chr1_135356272_135357330
          Length = 1059

 Score = 1228 bits (635), Expect = 0.0
 Identities = 655/663 (98%), Gaps = 4/663 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctcattcaataaaagaataccacaataaaacataggaggagcctgtccttcttgctc 60
           ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 786 attctcattcaataaaagaataccacaataaaagaaaggaggagcctgtccttcttgctc 727

                                                                       
Query: 61  agtctgagacttagagcagtgactggggtgacaagggaagccatccagttctcatctgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 726 agtctgagacttagagcagtgactggggtgacaagggaagccatccagttctcatctacc 667

                                                                       
Query: 121 gtcacttctccacagtccacaacccctgtgctgcttcaggggtcctttgcagttctgtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gtcacttctccacagtccacaacccctgtgctgcttcaggggtcctttgcagttctgtgc 607

                                                                       
Query: 181 tccccacactcttccttcttctagaacattctcccctttcttcctcaggtgacagacatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tccccacactcttccttcttctagaacattctcccctttcttcctcaggtgacagacatg 547

                                                                       
Query: 241 ctctctttgaagaaagttcagtgccttttcttcccccatctggggtggaagtgctacact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ctctctttgaagaaagttcagtgccttttcttcccccatctggggtggaagtgctacact 487

                                                                       
Query: 301 gcataggactctgcacaggactccaacaccttattctgcaatggtgcatggtctgctgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gcataggactctgcacaggactccaacaccttattctgcaatggtgcatggtctgctgaa 427

                                                                       
Query: 361 gagtccagaccctgtcatatgtgcatctgtgaagggctggcttgggccatgactccttca 420
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gagtccagaccctgtcatgtgtgcatctgtgaagggctggcttgggccatgactccttca 367

                                                                       
Query: 421 ctaacatatccaggactcagccagtgtttactgaatgggctgggactggataccaccatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ctaacatatccaggactcagccagtgtttactgaatgggctgggactggataccaccatg 307

                                                                       
Query: 481 tccttacccccaggagatgttatactaagctaacatagtacagctgttttatgggatttt 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 306 tccttacccccaggagatgttatactaagctaacatagtacagctgttttatggg--ttt 249

                                                                       
Query: 541 tttggggggggggctgtcaattttttaaaattcttaagataggagtggtagaaagagtgc 600
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttgggggggg--ctgtcaattttttaaaattcttaagataggagtggtagaaagagtgc 191

                                                                       
Query: 601 tatggaaacctacaactaaagaaacttcttaaaatatatataatatataaaaagcttaaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tatggaaacctacaactaaagaaacttcttaaaatatatataatatataaaaagcttaaa 131

              
Query: 661 tgg 663
           |||
Sbjct: 130 tgg 128


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1059
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1049
Effective search space:   684997
Effective search space used:   684997
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no122_k09.g1 MSMg01no122_k09.g1 CHROMAT_FILE:
MSMg01no122_k09.g1 PHD_FILE: MSMg01no122_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:21 2005
         (688 letters)



>mm_chr1_135203243_135204330
          Length = 1088

 Score = 1321 bits (683), Expect = 0.0
 Identities = 686/687 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgagccaggcatgatggttggaaggatgaatgtttaattagcttcttccttttctagcta 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tgagccaggcatgatggttggaaggatgaatgtttaattagcttcttccttttctagcta 261

                                                                       
Query: 62  aggctttgctggaagacttgctggccagccaggcagcctctagggcgccccctcctgctc 121
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 262 aggctttgctggaagacttgctggccagccaggccgcctctagggcgccccctcctgctc 321

                                                                       
Query: 122 acaacatgcatcactctttcccatggtggccagttgagaaagcagccacaggctgaggtt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 acaacatgcatcactctttcccatggtggccagttgagaaagcagccacaggctgaggtt 381

                                                                       
Query: 182 cagtctggctgttctatggccagactccttcctcgggttggccttgtggaggtccctccc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cagtctggctgttctatggccagactccttcctcgggttggccttgtggaggtccctccc 441

                                                                       
Query: 242 caggagggtggatggtggactcccagctcctgtggctagaaaatcagaccaggagtgtcc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 caggagggtggatggtggactcccagctcctgtggctagaaaatcagaccaggagtgtcc 501

                                                                       
Query: 302 acttcagaggtctcttgtccctgctcctgggtgggctacattggaagtgatggaaaagag 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 acttcagaggtctcttgtccctgctcctgggtgggctacattggaagtgatggaaaagag 561

                                                                       
Query: 362 tattcctagctgatatttgatatcttttgggagcagtttaaaagcataatttttagatat 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tattcctagctgatatttgatatcttttgggagcagtttaaaagcataatttttagatat 621

                                                                       
Query: 422 aacagcctattaatagaagactaataacaacgatagtaatttatataactatactagaat 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aacagcctattaatagaagactaataacaacgatagtaatttatataactatactagaat 681

                                                                       
Query: 482 gttaatagcaataactatctcattagtgcttatatgattaatcagggtgcccagatcaat 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gttaatagcaataactatctcattagtgcttatatgattaatcagggtgcccagatcaat 741

                                                                       
Query: 542 gcactggtatatgcttctcagtaatgcccgccgccccagtgtggtaggtactattcttag 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gcactggtatatgcttctcagtaatgcccgccgccccagtgtggtaggtactattcttag 801

                                                                       
Query: 602 ctaagaaactgaggtacagaaattttaaatagaaaccctaaggtctcatgcatgacatta 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ctaagaaactgaggtacagaaattttaaatagaaaccctaaggtctcatgcatgacatta 861

                                      
Query: 662 gagctttccggttttaatggctgtcgt 688
           |||||||||||||||||||||||||||
Sbjct: 862 gagctttccggttttaatggctgtcgt 888


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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