Query= MSMg01no122_m21.b1 MSMg01no122_m21.b1 CHROMAT_FILE:
MSMg01no122_m21.b1 PHD_FILE: MSMg01no122_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:41 2005
(499 letters)
>mm_chr1_58419766_58420664
Length = 899
Score = 911 bits (471), Expect = 0.0
Identities = 493/503 (98%), Gaps = 6/503 (1%)
Strand = Plus / Plus
Query: 1 actctggagagagacagagacacacagagagccctagagagcaagacagagaaagagac- 59
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 199 actctggagagagacagagacacacagagagacagagagagcaagacagagaaagagaca 258
Query: 60 ---agagacagaaagggacacaaaaaggaaagaaagaagaccctgcctcacaagagagac 116
||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 259 gagagagacagaaagggacacaaaaaggaaagaaagaagaccctgcctcaaaagagag-- 316
Query: 117 agacagacagacagacagacagacaggggttgggggagggataaaaggaaagaaaaggtt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 agacagacagacagacagacagacaggggttgggggagggataaaaggaaagaaaaggtt 376
Query: 177 ccgagtacttgtattcctgagacccccatccggctgctcacaaccagctccaagagatgg 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ccgagtacttgtattcctgagacccccatccggctgctcacaaccagctccaagagatgg 436
Query: 237 agaagtggaacactttctcctggtctctgtgggcacctgcactcaaatatacacagaaca 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agaagtggaacactttctcctggtctctgtgggcacctgcactcaaatatacacagaaca 496
Query: 297 taaatagtcgcagattttgtattctgaaataaaaatacaatttgttctaatgactaagaa 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 taaatagtcgcagattttgtattctgaaataaaaatacaatttgttctaatgactaagaa 556
Query: 357 ggtgacgaataactaggaaaggtctgtgtgcaagaacacaggtcttggaaagttcggaac 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ggtgacgaataactaggaaaggtctgtgtgcaagaacacaggtcttggaaagttcggaac 616
Query: 417 ctcctcctttggcaacctcttcctcgtcattagagaaataacaggtcacctggacttttt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ctcctcctttggcaacctcttcctcgtcattagagaaataacaggtcacctggacttttt 676
Query: 477 tcttaaacagaaatgatggtaaa 499
|||||||||||||||||||||||
Sbjct: 677 tcttaaacagaaatgatggtaaa 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no122_m21.g1 MSMg01no122_m21.g1 CHROMAT_FILE:
MSMg01no122_m21.g1 PHD_FILE: MSMg01no122_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:41 2005
(736 letters)
>mm_chr1_58554263_58555399
Length = 1137
Score = 841 bits (435), Expect = 0.0
Identities = 450/455 (98%), Gaps = 1/455 (0%)
Strand = Plus / Minus
Query: 279 ctgaagtggctcttaatagatttaacagtgctatacttatatactataccattagaatga 338
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 784 ctgaagtggctcttaatagattgaacagtgctatacttatatactataccattagaatga 725
Query: 339 attaagatcgttcttgcaaaagcagattat-aaaaaaatgtatgtcccctgggtgactct 397
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 724 attaagatcgttcttgcaaaagcagattataaaaaaaatgtatgtctcctgggtgactct 665
Query: 398 taaacttcttgactttctatatggcacagccaagggaactttatcaaggatctcatgcta 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 taaacttcttgactttctatatggcacagccaagggaactttatcaaggatctcatgcta 605
Query: 458 gctccatgtccaggaaaaaaagagcaccttgtatttataaagttcctcacttcagagatt 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gctccatgtccaggaaaaaaagagcaccttgtatttataaagttcctcacttcagagatt 545
Query: 518 ttcttttttcttttctcagattctattttatttatggacatgtgggtgtacagagagcat 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ttcttttttcttttctcagattctattttatttatggacatgtgggtgtacagagagcat 485
Query: 578 tggacctgctgtgggctaccagatgcgggtgttgggagtccaagtcagattctctggacg 637
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 484 tggatctgctgtgggctaccagatgcgggtgttgggagtccaagtcagattctctggatg 425
Query: 638 aggggaagcatttttaaccactgacccatttctccgagtcagggtttgtttgctgggtaa 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 aggggaagcatttttaaccactgacccatttctccgagtcagggtttgtttgctgggtaa 365
Query: 698 cagaactcgttcagataggctttacatccactgtc 732
|||||||||||||||||||||||||||||||||||
Sbjct: 364 cagaactcgttcagataggctttacatccactgtc 330
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 736
Length of database: 1137
Length adjustment: 10
Effective length of query: 726
Effective length of database: 1127
Effective search space: 818202
Effective search space used: 818202
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
