Query= MSMg01no123_e12.b1 MSMg01no123_e12.b1 CHROMAT_FILE:
MSMg01no123_e12.b1 PHD_FILE: MSMg01no123_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:48 2005
(273 letters)
>mm_chr1_25425405_25426077
Length = 673
Score = 505 bits (261), Expect = e-147
Identities = 270/273 (98%)
Strand = Plus / Plus
Query: 1 atattaatacaaagtttaaacagttaccaatgcattgagatagagcctgcctgctaatgg 60
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 atattaatacaaagtttaaacagttaggaatgcattgagatagagcctgcctgctaatgg 260
Query: 61 ctttgtctataagctctccacctttgctatctgaaaattctcaacctcaagtgtttgagt 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttgtctataagctctccacttttgctatctgaaaattctcaacctcaagtgtttgagt 320
Query: 121 ttgatatattttattttccaattacattgacaatacaagtgagttttcaaaaatgattac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgatatattttattttccaattacattgacaatacaagtgagttttcaaaaatgattac 380
Query: 181 atctcatttgtaactctgggtatgtagctctgtgtgatatgtgtcctcaaaggccataag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctcatttgtaactctgggtatgtagctctgtgtgatatgtgtcctcaaaggccataag 440
Query: 241 aaggtgtccaatttcttggaacttgggctggtg 273
|||||||||||||||||||||||||||||||||
Sbjct: 441 aaggtgtccaatttcttggaacttgggctggtg 473
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space: 175296
Effective search space used: 175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no123_e12.g1 MSMg01no123_e12.g1 CHROMAT_FILE:
MSMg01no123_e12.g1 PHD_FILE: MSMg01no123_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:48 2005
(645 letters)
>mm_chr1_25533831_25534875
Length = 1045
Score = 1143 bits (591), Expect = 0.0
Identities = 624/635 (98%), Gaps = 2/635 (0%)
Strand = Plus / Minus
Query: 12 aactatctgccgtcggc-caatcatggcattgtcagctgctgtggacaatcaggagtagc 70
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 678 aactatctgccgtcggcaaaatcatggcattgtcagctgctgtgcacaatcaggagcagc 619
Query: 71 accgtatcccacgcctgggattaaaaccaaaaaatattcttataattctgctgtggtttt 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 accgtatcccacgcctgggattaaaaccaaaaaatattcttataattctgctgtggtttt 559
Query: 131 tatttctttatttaatttaacttttgtggtcaaagttctcattaatattatcattcaaat 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tatttctttatttaatttaacttttgtggtcaaagttctcattaatattatcattcaaat 499
Query: 191 cacaagcatgaagaaggaaattattgaggtcatctgcaaactgtcatttaacaaaggctc 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cacaagcatgaagaaggaaattattgaggtcatctgcaaactgtcatttaacaaaggctc 439
Query: 251 attctattccagggccaccaaattcattcgatagccttccctccagatctttaggtccta 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 attctattccagggccaccaaattcattcgatagccttccctccagatctttaggtccta 379
Query: 311 aacaagtcttggtaccactcaggattttcttttcttttttctttttgttttttgtattat 370
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 378 aacaagtcttggtaccactcaggattttcttttcttttttcttttttttttttgtattat 319
Query: 371 taatcattttattctttacaatttaaatgatatctccctttccgattaccactccacaac 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 taatcattttattctttacaatttaaatgatatctccctttccgattaccactccacaac 259
Query: 431 ctccaattcccatcttccctctcccccttactctttgcatttatgaaggtgctactccac 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ctccaattcccatcttccctctcccccttactctttgcatttatgaaggtgctactccac 199
Query: 491 ccacttgcccactcccaactcactgctacagcacccccatatgctgggacatccaacctc 550
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 198 ccacttacccactcccaactcactgctacagcacccccatatgctgggacatccagcctc 139
Query: 551 cacaggactaagggtctcctctcccattgatttcagataaggccatcctctgctacatat 610
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 cacaggaccaagggtctcctctcccattgatttcagataaggccatcctctgctacatat 79
Query: 611 atatctggagtcatggatccctccatgtacactct 645
|||||||||||||| ||||||||||||| |||||
Sbjct: 78 gtatctggagtcatg-atccctccatgtatactct 45
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
