BAC Information

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BAC

Clone NameMSMg01-123F14
Chromosome1 (Build37)
Map Location 76,388,381 - 76,388,789
singlet/doubletsinglet
Overlap genenone
Upstream geneSpeg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
Downstream geneLOC100039137, Tfdp1-ps, Epha4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123F14.T7 (MSMg01no123_f14.b1)MSMg01-123F14.TJ (MSMg01no123_f14.g1)
ACCAG332973AG332974
length1,3361,303
length of high quality
(start - end)
424 (40 - 463)377 (91 - 467)
definitionCHROMAT_FILE: MSMg01no123_f14.b1 PHD_FILE: MSMg01no123_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:57 2005CHROMAT_FILE: MSMg01no123_f14.g1 PHD_FILE: MSMg01no123_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCGGTATTTNNNNGGCATTGGGCGCTAACACTCCTAAGGGAGAGGATCC
GCGGAATTCAGGGCAATTTAGTTTCAAGCCAGATCTGCTGGAATCTTCAA
ATTCTGTTAGGGTGAAAGCACATCTTGATCTTCATGACTGCAGCCTTTTT
GCATTTAAGGAAAGCAGCTGAGAGCAAGTGAAGCGCACTCTCAAATCATC
ACTCCCCCTTGCATGGCGTGACTGATTACAGCCCCTGTGTATCGAGAGGA
CTTGGCTTTGACTCATTTGGCCTAGAAGACTCTCTAGGCTCGTTGTGGAT
GATTGGCCAGGAAATGAAATCCCCTCCTGCCCATAGTTTGCCACCATGTG
TAGGGTGATTTGGAGCCTTGCTGGTCACTGGATCAGGCAAAGTCACTGTT
TTTGTATTAATAACTCAGCTTTAGGGTCCCTGCAGAGGAATCTTCGAGCT
GGCTAACTGTTCTTAGTGCCCCCCTTTACACACGTGGTCCAGTTGCTCCA
GATTCTGCTTAGGACATGTGGAAGCACACGTCAAACTGTCACTGGGTGCT
GCATTCATTGACAACTGGTAGAATTTTGTTCTGCCGACATAAAGAAAAAG
GGCAGGTCACAGTCCATGTTGGGACGCTCCAGTCCTTTCAGCTCACAAAA
TCTATGTGTTCTACGTCTGCTTTAAGACCACGGGTCAGCCTCCGGAAATG
TCCATTTTTCTTTTTTTTCTCCCAACATCGACCTCCCTTTTCTCTTCTCC
TGATTCCTCCTTCTTACTCTTCCCCCTCCCTTCTCCCCCCCTCAACTATT
CTTCTCTCCTCCCTTCCACTCCTCTCTTTTCTCCTCCCTCCTCCTCATTC
TCCCCATTTCTCTACTATCCCCTCTTCCCTTTTACATCCCTCTTTTTCCT
TCACTTTCTTCCTCTTCTTATCTCTTCTCCATTGCTCTCTCTCTTCTTTC
CCTTCCCCTTACCTCTCCTTCTTTCCCTACTCTACTTTTACTCCTTTTTC
CTTTACTTTCATCTCCTCTTCCCTCATCCTCTTCTTTCCCTCTCTTCCTA
TCCTTTTCTCCCTCTCACTTACCTCTACTCCTCCCCACCCCCTCCCTTCT
TCCTTTCTTTCTCTCTTTATCCTCTCTCCCCTCCCATATTCTCCTCTCTT
CTCTTCATCTTTCCCCTCTTATTTCTATACCATATTCTTCCCTCTCATCC
TACTTCTATTTCTTCCCTCATCACCCCCTCCTATATTCCTTTCTCCATCA
ACCTATCTTCTCCTCTTTCCTCTCTCNCCTTCCCACNCTATCTCCATCTG
TTTCCACTCTTCTCTCTCCTCTCTACTTATATCACG
AAAATTTTNTNATAGCAGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCCTTACTCATGACGAAGCTGTAG
TAAATAAAACAGCTCGGCACTGGAATCATCATCATCAACACACACCCACA
CCCACATGCACACGCACATACAAACAGAAGGTGGGAGACTTGTGAAACAC
ATTATAAATCCCCAAACCACATTTCTTTATAATGTCCCACCAGTTATAAA
TACCAACTCAAAGTTTACTAAGGACCAAACTATGAAACTCCTGTAAGAAA
ATATGAGAGAAGTACTTCAAATTGATTTTTTTATATGAACCCCAAAGCAC
AGGAACAAACACAAAAGTTAACAATTAGAATTATGTAATACCAAAACACT
TCTGCACAGCAATGTTAAATATAAACAGAGTGAAGACAACAGACTTCACA
TGAAGGTAACAATAACTTTGTTATTCTTATGACAAGGGGATCAGGGCTGG
AGAGAAAGCCCCAATAAAATAGGTGTTTGTCTCCAAACTGAAGACCTGAG
TTCAATCCCTGGGATCCACAAGTGGAAGACCGAACTGATATGTATATATA
ACATTTTATATATCCAGAATGTATAAGGAACTTAAATTCAACATAGTTTG
CCCCCCAAATTTTCCTACTTATAAACAGCCAAAAGATCTGAATAAGCATT
TATTTTCAAAGAGATGGTCAAATAACAACAGACATAATTAAAAAAAAATG
TTCAACATCGTTTTGAATAATATAAAAATGAATATCCAAATGATGAACCT
TATATCTCAGCCTACTTGAAATGGCTATGATGAAAAAGGGCGACAGATCC
TTGCGAAGCACCTTAATCCGTAAAATGTTTTGACCCCAATCCCCCCACAT
AAAATTTCAAACCCCCAGAAAACCCTTAATCAGCCGGGCGTAACCCCCAA
ACCCTAACTATATTAACAGACCCCAAAAGTACCTTAAACTTCAAATTTTT
GAAAAAAAATCTTTAAGTCCCGGGCCATCGGTTTCATCTACCTCCGAAGT
AACAATAAGGGTGGCCCCTGGGACCCCCTGGCCCAGGCCTCTCCACTAAA
TCTCAAACCCCCTCGTCTCATGTGAGGGCGAAAAAAAACTTTCAGTCAAA
AATCTTTGACTTGTTACCCCCCCTCCCCCCTATTGTACATACTCCTCTTG
CCTGGCCCACACTTTACCACTCTCAATATACTTTGCACTCGCGGCACTCT
ATTCTCTCCTCCCGTCGCTCAAATCAACATACATCTGTCGCGCTTTCTCA
TTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_f14.b1 MSMg01no123_f14.b1 CHROMAT_FILE:
MSMg01no123_f14.b1 PHD_FILE: MSMg01no123_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:57 2005
         (424 letters)



>mm_chr1_76388167_76388990
          Length = 824

 Score =  775 bits (401), Expect = 0.0
 Identities = 407/409 (99%)
 Strand = Plus / Plus

                                                                       
Query: 15  gaattcagggcaatttagtttcaagccagatctgctggaatcttcaaattctgttagggt 74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gaattcagggcaatttagtttcaagccagatctgctggaatcttcaaattctgttagggt 274

                                                                       
Query: 75  gaaagcacatcttgatcttcatgactgcagcctttttgcatttaaggaaagcagctgaga 134
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gaaaggacatcttgatcttcatgactgcagcctttttgcatttaaggaaagcagctgaga 334

                                                                       
Query: 135 gcaagtgaagcgcactctcaaatcatcactcccccttgcatggcgtgactgattacagcc 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gcaagtgaagcgcactctcaaatcatcactcccccttgcatggcgtgactgattacagcc 394

                                                                       
Query: 195 cctgtgtatcgagaggacttggctttgactcatttggcctagaagactctctaggctcgt 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cctgtgtatcgagaggacttggctttgactcatttggcctagaagactctctaggctcgt 454

                                                                       
Query: 255 tgtggatgattggccaggaaatgaaatcccctcctgcccatagtttgccaccatgtgtag 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tgtggatgattggccaggaaatgaaatcccctcctgcccatagtttgccaccatgtgtag 514

                                                                       
Query: 315 ggtgatttggagccttgctggtcactggatcaggcaaagtcactgtttttgtattaataa 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 515 ggtgatttggagccttgctggtcactggatcaggcaaagtcactgtttttgtattaagaa 574

                                                            
Query: 375 ctcagctttagggtccctgcagaggaatcttcgagctggctaactgttc 423
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ctcagctttagggtccctgcagaggaatcttcgagctggctaactgttc 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)