BAC Information

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BAC

Clone NameMSMg01-123M22
Chromosome1 (Build37)
Map Location 168,570,044 - 168,570,376
singlet/doubletsinglet
Overlap geneEG226604
Upstream geneRcsd1, Creg1, Cd247, Pou2f1, LOC665409, Dusp27, Gpa33, Mael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601
Downstream gene4831428F09Rik, LOC240895, LOC622102, C030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123M22.T7 (MSMg01no123_m22.b1)MSMg01-123M22.TJ (MSMg01no123_m22.g1)
ACCAG333320AG333321
length1,2211,202
length of high quality
(start - end)
333 (133 - 465)147 (266 - 412)
definitionCHROMAT_FILE: MSMg01no123_m22.b1 PHD_FILE: MSMg01no123_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:02 2005CHROMAT_FILE: MSMg01no123_m22.g1 PHD_FILE: MSMg01no123_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGAATTATNNNNNNGGCCACTGGGCGCTATAXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTGTGTTCTCTTACTCCCATTTAGTCCGCAGAGAAACA
TGTCCTTGCAATTCAAATGGCCTTATGCCTGCTAAAGCCAGAGGAAGTCT
CAACTCACAGTCTCTGCAGGTAGCAAGCTTATACCCAAGAGCAAAATCAG
GATATGACACCAAACCTGGTCAGCGACCCTGCTGATCTCGCCTGCCACAT
CTGCTCCAGAATTCCCAAGGCCAATCACTGCCACTCTCTTCCCCACAAAG
TTGTCCGGGCGTTTGTACTCCCAGGTGTGGAGATAGCTGCCTTGGAACTT
GCTGATTCCTGTGAAGGAAGAATCAACCCCTCAAGTCACAGCAGAAGTGG
AAGACATCGCTTGACGGATTTTATTTCTAAGCTTGAAGTTGATGCTATTC
TACTCCCTCTTTTGCTTGTGGACTTCCATGCCACGATTACAGAGTATTGT
CCTCCAAAACTCAATGGCAGCGGCTATATGGCCAACACCAAAATCAGAGC
AGAGTTTTTTTTGTTTTGTTTTGGTTTAAAGTAGTTGATAAAAATATATC
ATTTTAAGATTTACTCGGTGTGCTAACTCTTTTTCACTTTAGAGTGACAC
TGCAATTTTCTAATATTCTACACAGAGATATGAGACAGTTTCTTCACTTT
TTATAACTCTTTGGAAACCCACAAGTTTGTAAAGAACATTAGCAAGGTAT
TGATGATATTCAGAATCAACTTTAAAGCCAGGTACACATGCAGTTTTAAA
GCCCAGGAGCCCAAAAGCTCTGATAAAGGTAGTAATTTTAAGTCTGTATT
TTACTTGAACCCAGGAAAATCTGAGATGCTACTATGTAATTAATATAAAC
ATATTGCTGAAGATCTTCCTGTGCTCCTACCGTGTTTCCAAAGTGTGGCT
GTATATTTTTCCAAGGAAACATTCTTAACTTTTGTGTCCTTCCCCATATC
ACTTTCCCCCCCTACTTCTTTCTGGGCCGGTGGGCCCCCCTTCTTACTCT
CTATAATCCTTAATTCCGTGGTATATTCCCATACTTTCCCCGCTTCTCCC
CCTGACAATTTTTTATTTTTCCTTATGTCTTACTTTCGCCCTCCTCTTTT
ACTACCATTCCCTTCATTTCTCATCTTCTCTCCTTCTTTCTCTCTATATT
TTTCCTTTCTCCGTCTCTGGC
NTAACTCTNNNNNNTAAGATGCGAGCCGCXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTCACCCGAGGAATACCGAA
TGGCAGAGAAGCACCTGAATTAATGCTCCACCTCCTTAATCATCAGGGAA
ATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGC
TAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAA
GAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTC
TGGAGATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGA
GGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTG
GTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATA
GCCAGAAGCTGGAATGAACCCAGATGCCCCTCAACAGAGGAATGGATACA
GAAGATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGA
ATGAATTTATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATC
CTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACT
GATAAGTGGATATTAGCCCAAAACCTAAGATACCCAAGATATAAGATACA
ATTTCCCAAACACATGAAACTCCAGAAAAATGAAGACTGAAGTGTGAACA
CTATGCCCCTTCCTTAGAAGTGGGAGCAAAACACCCTTGGAAGGAGTTAC
AGAGACCAAGTTTGGATTTGAGATAAAAGGATGGACCATGTAGACCCCAC
CCCTATCCGGGGGATCCCCTCCCATAAATCCCGCTTTCCAAATGCCTGAA
CCCCCATTGCCCTACCCCCAACCCAGAATCTATGCCCGTAAAAGGGACCC
CGGGAATAAAACCCCGCCCCTCCTTGCCCCACAATAATGGCCCCTGGGCC
CCCTTTCCAAAACCTTAGATAAGGTGCGAATGCCTCCCCCCCGCTCCGGC
CCTATTTTGGCAATGCGGACTCCCCCCCGTGCCCCCCCCCCCACTTGGAA
CCTCAAGCCCTTTAACACACAAAGCTATCCCACCAAACAAAACCCCTCAA
ACGGTGGGAATCTCTTGCCACAACCCCCCCTATTAAGCGTTCGGCCAAAC
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_m22.b1 MSMg01no123_m22.b1 CHROMAT_FILE:
MSMg01no123_m22.b1 PHD_FILE: MSMg01no123_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:02 2005
         (333 letters)



>mm_chr1_168569844_168570576
          Length = 733

 Score =  613 bits (317), Expect = e-180
 Identities = 329/333 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaagccagaggaagtctcaactcacagtctctgcaggtagcaagcttatacccaagagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 taaagccagaggaagtctcaactcacagtctctgcaggtagcaagcttacacccaagagc 260

                                                                       
Query: 61  aaaatcaggatatgacaccaaacctggtcagcgaccctgctgatctcgcctgccacatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaatcaggatatgacaccaaacctggtcagcgaccctgctgatctcgcctgccacatct 320

                                                                       
Query: 121 gctccagaattcccaaggccaatcactgccactctcttccccacaaagttgtccgggcgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 321 gctccagaattcccaaggccaatcactgccactctcttccccacaaagttgtcggggtgt 380

                                                                       
Query: 181 ttgtactcccaggtgtggagatagctgccttggaacttgctgattcctgtgaaggaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtactcccaggtgtggagatagctgccttggaacttgctgattcctgtgaaggaagaa 440

                                                                       
Query: 241 tcaacccctcaagtcacagcagaagtggaagacatcgcttgacggattttatttctaagc 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaacccctcaagtcgcagcagaagtggaagacatcgcttgacggattttatttctaagc 500

                                            
Query: 301 ttgaagttgatgctattctactccctcttttgc 333
           |||||||||||||||||||||||||||||||||
Sbjct: 501 ttgaagttgatgctattctactccctcttttgc 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)