Query= MSMg01no124_a20.b1 MSMg01no124_a20.b1 CHROMAT_FILE:
MSMg01no124_a20.b1 PHD_FILE: MSMg01no124_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:37 2005
(337 letters)
>mm_chr1_41117954_41118691
Length = 738
Score = 634 bits (328), Expect = 0.0
Identities = 334/336 (99%), Gaps = 1/336 (0%)
Strand = Plus / Minus
Query: 1 ctgctagaagcatctagaaacttcttagtaaacacttagttgttttctgagaagcaccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ctgctagaagcatctagaaacttcttagtaaacacttagttgttttctgagaagcaccat 477
Query: 61 aggtcaatagcataaaaggaacctcaactgaagaaataggcag-tttttttttcaatatt 119
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 476 aggtcaatagcataaaaggaacctcaactgaagaaataggaagttttttttttcaatatt 417
Query: 120 actgaggaagactgtttgagagttagggttcttactgttttcattccttcttgtccccct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 actgaggaagactgtttgagagttagggttcttactgttttcattccttcttgtccccct 357
Query: 180 gcctacactttcagtaactcactcagtcagcttggtacaattaccgcttcctctgccctc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gcctacactttcagtaactcactcagtcagcttggtacaattaccgcttcctctgccctc 297
Query: 240 ggaaaacgaggcacaaaggcatgcatttggttcatgtgaagggggttgtcactaaccttt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ggaaaacgaggcacaaaggcatgcatttggttcatgtgaagggggttgtcactaaccttt 237
Query: 300 aagacctgcctgcatcagtcaggctaaaaatgttca 335
||||||||||||||||||||||||||||||||||||
Sbjct: 236 aagacctgcctgcatcagtcaggctaaaaatgttca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 738
Length adjustment: 9
Effective length of query: 328
Effective length of database: 729
Effective search space: 239112
Effective search space used: 239112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no124_a20.g1 MSMg01no124_a20.g1 CHROMAT_FILE:
MSMg01no124_a20.g1 PHD_FILE: MSMg01no124_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:37 2005
(679 letters)
>mm_chr1_40962487_40963565
Length = 1079
Score = 1174 bits (607), Expect = 0.0
Identities = 646/679 (95%), Gaps = 32/679 (4%)
Strand = Plus / Plus
Query: 1 ttaaaacagaaacaaagtttttttctcagggcacagtacctagagacagtaggatcagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaaaacagaaacaaagtttttttctcagggcacagtacctagagacagtaggatcagag 260
Query: 61 aattctataaagtagttttaacacatggatttgctgcatggtgatttctgtttttcctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattctataaagtagttttaacacatggatttgctgcatggtgatttctgtttttcctca 320
Query: 121 ttaatgatgttacaaagaaaagtggtaccttgcttctctttaaagttcaattttcttatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaatgatgttacaaagaaaagtggtaccttgcttctctttaaagttcaattttcttatc 380
Query: 181 aatcaagaaagctcaagtaatagtatcattgaaagatcggagagatatgaaattaaataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatcaagaaagctcaagtaatagtatcattgaaagatcggagagatatgaaattaaataa 440
Query: 241 ggatgtcaataaatgtgtgtgatgtgcaagtagcttaggatactttgtctcagaaaagta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggatgtcaataaatgtgtgtgatgtgcaagtagcttaggatactttgtctcagaaaagta 500
Query: 301 attacccattgagcacttacatgggctcctgagatttgaactcaggtcagcacatttacc 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 attacccattgagcacttacatgggctcttgagatttgaactcaggtcagcacatttacc 560
Query: 361 ttctgagccatcttgccacccatccctgttcccattttgacacaggaagtacaatctttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctgagccatcttgccacccatccctgttcccattttgacacaggaagtacaatctttg 620
Query: 421 tgggaaactgcttaccatgtgacctctctctctctctctccctcttctctctcttctctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgggaaactgcttaccatgtgacctctctctctctctctccctcttctctctcttctctc 680
Query: 481 tctcctctctcttttctctctcttctctctctcttctctctctcctctcttctctctctc 540
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 681 tctcctctctcttttctctctcttctctctctcttctctctctc-tctcttctctct--- 736
Query: 541 ctctctcttctctctctttcttctccctttcctctctctcctctttctctctctcctctc 600
||||||||||||||||||||||||||||||||
Sbjct: 737 ----------------------------ttcctctctctcctctttctctctctcctctc 768
Query: 601 tctctctcttagtttatccacttccataattgaacagttacttttatttgcattggctca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 tctctctcttagtttatccacttccataattgaacagttacttttatttgcattggctca 828
Query: 661 tttgactttactgacttgt 679
|||||||||||||||||||
Sbjct: 829 tttgactttactgacttgt 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 88
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space: 715161
Effective search space used: 715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
