Query= MSMg01no124_c05.b1 MSMg01no124_c05.b1 CHROMAT_FILE:
MSMg01no124_c05.b1 PHD_FILE: MSMg01no124_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:49 2005
(466 letters)
>mm_chr1_193517447_193518311
Length = 865
Score = 855 bits (442), Expect = 0.0
Identities = 460/466 (98%), Gaps = 1/466 (0%)
Strand = Plus / Plus
Query: 1 ctagaaacttttcatggcaatgtaaataataaagtaaaccaattacagttcatggacaaa 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctagacacttttcatggcaatgtaaataataaagtaaaccaattacagttcatggacaaa 260
Query: 61 actgataagctgttacaaacagccacgtcagaggaagctgtaccctgtaaaaatgtggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgataagctgttacaaacagccacgtcagaggaagctgtaccctgtaaaaatgtggca 320
Query: 121 agaagcaaattaccttgtctctgctaacttcaaaataccattgacagcagggctggattt 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 agaagcaaattaccttgtctctgctaatttcaaaataccattgacagcagggctggattt 380
Query: 181 atgttacatgatatatttcacagattaaaaaccagggtctagagttactaaggatgacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgttacatgatatatttcacagattaaaaaccagggtctagagttactaaggatgacat 440
Query: 241 gggtgaaggtagcaactgcatacaggagatatgaatatcacattagctgtggctaatggg 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 gggtgaaggtagcaactgcatacaggagatatgaatatcacagtagctgtggctaatggg 500
Query: 301 caatcaatcatcttctgaagcagcaggagggttaataagtatcctcacagactaacacac 360
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 caatcaatcaccttctgaagcagcaggagggt-aataagtatcctcacagactaacacac 559
Query: 361 aacccagacaattcccaagaattctgaggcccatgggttagaaagtgtctgttccaatag 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 560 aacccagacaattcccaagaattctgaggcccatgggttagaaagtgtctattccaatag 619
Query: 421 ttctcaaagtagtcaagtatttcctaaagtgtggtcaatctcagca 466
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttctcaaagtagtcaagtatttcctaaagtgtggtcaatctcagca 665
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 865
Length adjustment: 10
Effective length of query: 456
Effective length of database: 855
Effective search space: 389880
Effective search space used: 389880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no124_c05.g1 MSMg01no124_c05.g1 CHROMAT_FILE:
MSMg01no124_c05.g1 PHD_FILE: MSMg01no124_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:50 2005
(574 letters)
>mm_chr1_193645860_193646833
Length = 974
Score = 1033 bits (534), Expect = 0.0
Identities = 565/576 (98%), Gaps = 2/576 (0%)
Strand = Plus / Minus
Query: 1 aggcaggaggatcactttgagttcaaggacatcctggtctacaaagtgagttccaggaca 60
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 877 aggcaggagaatcactttgagttcaaggacagcctggtctacaaagtgagttccaggaca 818
Query: 61 gtcagggctacacagagagatcctgtctcagg--aaaaaaaaaagttaaattctaaaata 118
|||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 817 gtcagggctacacagagaaatcctgtctcagggaaaaaaaaaaagttgaattctaaaata 758
Query: 119 ctcacaggagacatgtaatagggtgtgccaacaaacgtttttgcaaaactcgtgtcgtga 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ctcacaggagacatgtaatagggtgtgccaacaaacgtttttgcaaaactcgtgtcgtga 698
Query: 179 tttaatattctagctagtccaaagtcccccagcttgacattgtgtttgctgtccaggaag 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 tttaatattctagctagtccaaagtcccccagcttgacattgtgtttgctgtccaggaag 638
Query: 239 acattggctggcttcaggtcccggtgaagcacagtgtggccaccatcgttccttctgtga 298
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 637 acattggctggcttcaggtcccggtgaagcacagtgtggccaccatcgctccttctgtga 578
Query: 299 cactctttcagggccagcgtcaactgagtcatcactcgaaggacaaactcttcctccaag 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 cactctttcagggccagcgtcaactgagtcatcactcgaaggacaaactcttcctccaag 518
Query: 359 tactgtctggagaaaaagcacatttcacaaccctgaataaaagccatcttcaatctgggg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tactgtctggagaaaaagcacatttcacaaccctgaataaaagccatcttcaatctgggg 458
Query: 419 cgagtcattcagagcgtacaaacatggaagtcaattattattagatacgaaccgtggggc 478
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 457 caagtcattcagagcgtacaaacatggaagttaattattattagatacgaaccgtggggc 398
Query: 479 tcttacaccttacctatccttggtcccctttgaaatgacactacccaggtcccctccctc 538
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 397 tctttcaccttacctatccttggtcccctttgaaatgacactagccaggtcccctccctc 338
Query: 539 acagtattccattacgatgtacagggttgtgttggt 574
||||||||||||||||||||||||||||||||||||
Sbjct: 337 acagtattccattacgatgtacagggttgtgttggt 302
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
