BAC Information

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BAC

Clone NameMSMg01-124D04
Chromosome1 (Build37)
Map Location 89,552,183 - 89,552,513
singlet/doubletsinglet
Overlap geneInpp5d
Upstream geneNppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2
Downstream geneAtg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124D04.T7 (MSMg01no124_d04.b1)MSMg01-124D04.TJ (MSMg01no124_d04.g1)
ACCAG333613AG333614
length1,2761,191
length of high quality
(start - end)
331 (128 - 458)574 (121 - 694)
definitionCHROMAT_FILE: MSMg01no124_d04.b1 PHD_FILE: MSMg01no124_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:58 2005CHROMAT_FILE: MSMg01no124_d04.g1 PHD_FILE: MSMg01no124_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGATACTTNNNNGAACACTGGGCGCTATAGACTCCTATAGGGAGAGGATC
CGCGGAATTCAACCCCTAACAAAGCACACTATTATAAAACTAGAAAATTA
TACACACACACCTGGTTTTGCCGTTAAATAATCCCAGACTATCTAAATGT
GTCATCTCTCAAACTCTCACCCACCTGGTCTTAGCATCCCCTGGTCAAGT
GCGTCTGCATCAGTAGTTACCATGATAGTTGCCAAATGCTGACTGCCTCT
TCTATCATTGGTCCCACAGTTATTAATTGACATTTCGCTGTAGGGAAAGC
TTCCCTTCTGATTTATTTATGTAAGGATAAAGTTGTGAATTCTCATTTTA
CCCAGTGGATTGTAACTATCTTCATTATTCATTTCAATGTTCAGAGTGTA
GTGGCTGCTCTCCTGCTACACTTGGTGGTTCCTGGCTCTTTTTGACAAAT
TGTCTTCACTTTTTTTCTTCGCCCCCTTCTCCCTAGAACCTACTACTGAA
GAAGAGGTGTGATATACTTCTTCATGCTGTGGTGACCCCCAATCATAAAA
CTAATTTCATTGCTACTTCATTAACTATAATTTTGCTACTGTTATACATC
AGAAGGTAAATATTTTTGAAGATAGAGGTTTGCCAAAGGGGTCACAACCA
ATAGGTTGAGAACCTCTACTCTAGAAATATATATATCAGGTTCTGCTGTG
CCTTCCCAGCCCCAGATTTGTAGGCTCTTATCTGAATTTAACAACCTCTG
GTTCTTTGTATTGTTGATAGCCCCCTTGATGTTTATATGCTCATTGCTGT
TTCTCTATGCCCCTCTCACCATAACGAACCAATATTGTGTGTTTACAAAC
GTATCCTGTCTGTTTGCTTCTCCTTTCTATTTCATTTTTTTCTCCCTCTT
TCCCCATTTCCACTCTCCATCTTATCTTAACTTTTTTCTATCTCTCTTCT
CCCCTATCTTCGCCTTGCTTTGTTTTCTCCCCTCCCCTTTATCCACTCTT
TTCATTACTCTCTCTCCTTCTCTTTTTTTATCTTTTTACCCTCTCTTCTC
TCTTCCTGCCTCTTCTTTATTCTCCCCTATCATTCTCTTTTTCTCTCCCT
TCTATTCCTTTCATGTATTCTATCTCTCTTCTTTCTCTCACTGTGTTTTC
TTCTCCCTTTCCATCTCCTCTTCCACCATTCCTCTCCCTCTATTCCTTTT
TCTATACTCCTCTCTCATTCTCTCTCTTCTCTTTCTCTCCTCTTCTTCAC
TTTTCTCGTAATCATTCTCACTTCTA
CTTCTTCTATCAGGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCCTTTTTAAGTTTGAGATAGAGTCATGCTTA
CATACCTTTGGCTTTATAATAACTCAAAATCCTTCCATCTTAGCCTTTGA
GTCAAAACTTTTTCTTTTCTTTTTCTTGAGTCAGGCCTCACTATGTCACT
CTGGCTAGCCTGGAACTCCCTACATAGACCAGGCTGGTCTTTTACTCAGA
GTCCATTCGCTTCTGCCTCCTGGGTGCTGGAATTAGAGAAGTACAACACC
ACACCTGGCAAAACATTTTCTAAAAAGATTTACTTTAAAATTGGTTATGT
ATATGAGCATTTTGTCTGCATGTATGTGCATCATGAATTTGCCTGGTGCT
TGTCTAGGCCTGAAAGGGGGCCCAGCTCTCCGGAACTGGGATAGATGGTT
GTGTGTGGACCTCTGTGTGGGTGCTAAGAACTAATCCAGGTTCTTTCCAA
GAATAGTGAGTGCTCCTAATCGCTAAGCCACATCTCCAGCCACAACGTCG
GCTTTTTAAAGATATTTATTTTATGTGTATGCCATAGAACATGTCTGTGT
ACCACTTATATGTAGTACCTACAGAGGCGCAGAACCTCCTAGAACCAGAG
TTACAGTTGTGAACCCCCGTGTGGGTGCTGGAAATCAAACCCAGATCCTC
TACAAGAGCAGCCAGTGCTCCTGATCACTGAGCCATCTCTCCAGCCCCAA
ACCTTTTCCTTTAAGCGGACAAATCCCAGTTCAGTGTAAAAGGACTGATA
AAGGATAACATTATCCAATGAACTGCAGCTATATTTATCCTAGCTCTTTA
GGCTTGTTTAGTGTGTCCCCCACCCTGTACCTGCCCGTAGCAATTCTCCT
GCCTTAGCATCCCCCCCAAACCCCTTTTCCATAATGGGATTATAGGTGTG
GGGCCTCAAACCTCGACTAATTCTGGCGCTTGGTAAATTGTGGGCCCCTT
CAAAAATTGTCCTTCTCCCAAGAGAACGACTTTAAAAAACCTTGGTTTTC
CCATGGTTCCCGGGCCCAAAACCTATAATTCCAAACAACCTTCCTTCCTG
GAATCCCAAGGGTTCCCGGAACCCAAATCCCCCATTTCCCCCTTTGCTCT
CCCCCCTTTGTAAGCCCCTCCCCCTTAAATCCTGGTTGGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_d04.b1 MSMg01no124_d04.b1 CHROMAT_FILE:
MSMg01no124_d04.b1 PHD_FILE: MSMg01no124_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:58 2005
         (331 letters)



>mm_chr1_89551983_89552714
          Length = 732

 Score =  601 bits (311), Expect = e-176
 Identities = 326/331 (98%), Gaps = 1/331 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataatcccagactatctaaatgtgtcatctctcaaactctcacccacctggtcttagcat 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataatccgagactatctaaatgtgtcatctctcaaactctcacccacctggtcttagcat 260

                                                                       
Query: 61  cccctggtcaagtgcgtctgcatcagtagttaccatgatagttgccaaatgctgactgcc 120
           |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 cccctggtgaagtgcgtctgcatcagtagttaccatgatagctgccaaatgctgactgcc 320

                                                                       
Query: 121 tcttctatcattggtcccacagttattaattgacatttcgctgtagggaaagcttccctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttctatcattggtcccacagttattaattgacatttcgctgtagggaaagcttccctt 380

                                                                       
Query: 181 ctgatttatttatgtaaggataaagttgtgaattctcattttacccagtggattgtaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgatttatttatgtaaggataaagttgtgaattctcattttacccagtggattgtaact 440

                                                                       
Query: 241 atcttcattattcatttcaatgttcagagtgtagtggctgctc-tcctgctacacttggt 299
           ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 441 atcttcattattcatttcaatgttcagagtgtactggctgctcctcctgctacacttggt 500

                                          
Query: 300 ggttcctggctctttttgacaaattgtcttc 330
           |||||||||||||||||||||||||||||||
Sbjct: 501 ggttcctggctctttttgacaaattgtcttc 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 732
Length adjustment: 9
Effective length of query: 322
Effective length of database: 723
Effective search space:   232806
Effective search space used:   232806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)