BAC Information

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BAC

Clone NameMSMg01-124I15
Chromosome1 (Build37)
Map Location 87,482,990 - 87,483,321
singlet/doubletsinglet
Overlap geneSp110
Upstream geneLOC100040213, LOC100039794, EG665338
Downstream geneSp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124I15.T7 (MSMg01no124_i15.b1)MSMg01-124I15.TJ (MSMg01no124_i15.g1)
ACCAG333867AG333868
length1,2651,292
length of high quality
(start - end)
473 (90 - 562)334 (129 - 462)
definitionCHROMAT_FILE: MSMg01no124_i15.b1 PHD_FILE: MSMg01no124_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:46 2005CHROMAT_FILE: MSMg01no124_i15.g1 PHD_FILE: MSMg01no124_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:46 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCTCTTTTCTATCACTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGGCCATTTAGAAGTCTCCTATAAATCCCACCAGTTAGAAACC
TGAATTATTCTTTTCCTCTGAGAAGGTTAAAGATTATGGCTGGGAATGTA
TGCTGGGTAGCTAAGTAATGACATGTACTTACACTGGTGGAGAGAAATTA
TTTAAAAAATTATTTTTATTATTTAGTGTATGATTTTGCTGCATGCATAT
ATGCATCATGTGTGTGCAGTACCCCAAGAGACCAGGAGAGGACATTGGAT
CCCATAGGACTGCAGTTATATATGGTTGTACTGTAGATGCTGGGAATTGA
ACCTGGGTTCTCTGTAAGAATAGCCAGTGCTCTTAATCACTGAGGTATCT
CTCCTGTACCACCAGAGTATTCCTAAGGGATAAGAGGACCATGTGATGAC
GGGTCTGGCCTTGAGGACATTGGAAAAGACTGATCCATAAGGCTTCCTGC
CTCCAAGTGAGGAGGTCTCTGATAAAAGGTTGGAGGATACTATAGAGGGC
GCTGCTGAAGGAGAGGTTGGAGGTGGAGTAAGAACCATCTACCAGAGGCA
AGCATCCAGAGAGGTGAACTCTGATTGAGTTCTGTAAGAATGAATGATTA
AGCACCAATTTTCCTACCCATCACACAAACGTGTAGCTCAGACTTTATTT
TTTCAAAACCTTACTTTTAAAATGGGTTCCTTAAATACTTTAACTCCCCC
CTTCTAGCCCTCCATCCTCCAGAGTTAGTGCTAAAGAAAGGTTATGAGAA
TACCCGCTAGTTGCACCTGTTTATAATTATTTCCTTGGAAAACATCCCTT
CTGCTTTTGTAGGAACTCCCCATTTCAGGTTCCTAGGAAATCCACACCTG
TCTGTTCCCTTCCACTTGAAAACTCTTTCCCTAATATACTATCACCTCCT
GCTTCATCGGTCTCCGTATACCTAACTCAATTTCTTCCCCCTTTAGACAC
TCTCCCCTGTTAAATCTGTTTTTAACTACACTCCCGTGGAATCCTGTTCC
TAAGACTCTTTTTTGTCTCATCCACTCTGAATCTTACTATATGTACCTCA
TCTCCAACCTTTTTTTTTCTATTTTCTTTCAGGGAATCCACCCTAATCCG
ATCCTCTCTAACCACCGTGTTCATATTTCTCTTTCTTGGTCCTTTCCTTC
CTACAAACACTCCTCCCTCAAACCTCTTTTCCCGTGCTTGCTCTTTAATA
AAAACCTTTCCCTCT
GAATTTTTTTTNTAGCATGTGAGTCTGGGTGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTTAATGTTTTTGTCTGTTAA
TTGTGCACTTGCACGTGCCTTTATGTGTATGATTTAACTCCGAGTTATCT
CTCTGATCTCAACCCTAACCTTTTTAAATGACCAGCTGGGGAAGGAAGAA
GAGATCAGAGTTTTGAACTAGAAGGAGCAAGCTTCAAGGACAAGTGTTAA
AATGAGAATTCTTTGAATCAGTTCTTGGGAAATTAAGGTAGGGAACAGAT
AATGTTAGAGCCTAAGGATGACTTCTGGGCATGAGAAACCAAGAATTTGT
GAAGGGAAAACAAGAACCAGACGTGAGGAGATAAAGACTTGAGCAGCTGG
AGTATTGGATCTTTTGCCTGCTATCCCAGCACTTGAAAGCATCCAGGACC
ATGGAAAGAACTGATGTGTCAGAAAACGGACTTGCAAGGCTTCCAGGAAG
CAAATGGGGAAACCAATGGATGACAGTATCAGAAAGGTCACAGTGTTTTT
ATCATTATTATCATTATCATAATTATGACATTTATCCAGTATGTGGAGGT
TGGTCATATGTTCCTTGGTACACATGGAGAGGTCAAGAAACAACTTGTGA
GTTGGGCCCGTCCTTCCACCATATGGGTTTCAGGGATCAAATTCTGGTCA
CCCGGTTTGGTGTCAAGGACCTCGTAGCTAGTGAGCCTTTTGCCAGACCC
ATGACACATTTTAATTGACTTGTTGACTCTCAGATTAGACTATTGGCATA
GCGCCCAAGCCCAGTTGTCAATAGCTATCTCGGTGCACTTCTAACTTGCT
TGCCCCCATGATCGTTTCATCCCCGCATCATGTATGTTGCCTGGCCTATG
ATTTACCTTGCATCCTTTTTCCTTTTGTTTTACCCTTGTGTACCCATTCC
TCCCCTGCTTTTTGTGGATTGTCCCTTTCTTCGCTTTTTTCCCACTGCCT
CTGTTTCCTTTTTCTCTACATTGCTTTTCCTTTTTCTCCTTTATTTTTTG
GCTTATCTCTTTTATTTATCCTTTAAGGTATAAATACAAGATTCTATATC
CCCTCGTGTCTTCTCGTACCTCCTCTCTGTTTGCTCCCTCCTTCTGTAAT
CCTTTCTCTGGTTCTCCTCTCTTCTCTATAAATCTGCCATTCTCTCTCCG
TTGTTCAACCTTAGCCTCTGTCCCCCTTTTCTGTTCCTTCAGATTTCTCT
ATTATCACTACTCTATATCTGTACTCTACTTCTCATTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_i15.g1 MSMg01no124_i15.g1 CHROMAT_FILE:
MSMg01no124_i15.g1 PHD_FILE: MSMg01no124_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:46 2005
         (334 letters)



>mm_chr1_87482790_87483522
          Length = 733

 Score =  605 bits (313), Expect = e-177
 Identities = 328/333 (98%), Gaps = 1/333 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgatttaactccgagttatctctctgatctcaaccctaacctttttaaatgaccagctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgatttaactccgagttatctctctgatctcaaccctaacctttttaaatgaccagctg 260

                                                                       
Query: 61  gggaaggaagaagagatcagagttttgaactagaaggagcaagcttcaaggacaagtgtt 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gg-aaggaagaagagatcagagttttgaactagaaggagcaagcttcaaggacaagtgtt 319

                                                                       
Query: 121 aaaatgagaattctttgaatcagttcttgggaaattaaggtagggaacagataatgttag 180
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 320 aaaatgagaattctttgaatcagttcttgggaaattaagctagggaacagataatggtag 379

                                                                       
Query: 181 agcctaaggatgacttctgggcatgagaaaccaagaatttgtgaagggaaaacaagaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agcctaaggatgacttctgggcatgagaaaccaagaatttgtgaagggaaaacaagaacc 439

                                                                       
Query: 241 agacgtgaggagataaagacttgagcagctggagtattggatcttttgcctgctatccca 300
           |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 440 agacatgaggagataaagacttgagcagctggagtattggatcgtttgcctgctatccca 499

                                            
Query: 301 gcacttgaaagcatccaggaccatggaaagaac 333
           |||||||||||||||||||||||||||||||||
Sbjct: 500 gcacttgaaagcatccaggaccatggaaagaac 532


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 733
Length adjustment: 9
Effective length of query: 325
Effective length of database: 724
Effective search space:   235300
Effective search space used:   235300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)