BAC Information

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BAC

Clone NameMSMg01-124J13
Chromosome1 (Build37)
Map Location 134,713,709 - 134,714,404
singlet/doubletsinglet
Overlap genenone
Upstream gene4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc
Downstream geneLrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124J13.T7 (MSMg01no124_j13.b1)MSMg01-124J13.TJ (MSMg01no124_j13.g1)
ACCAG333908AG333909
length1,2571,259
length of high quality
(start - end)
684 (82 - 765)554 (117 - 670)
definitionCHROMAT_FILE: MSMg01no124_j13.b1 PHD_FILE: MSMg01no124_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:54 2005CHROMAT_FILE: MSMg01no124_j13.g1 PHD_FILE: MSMg01no124_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTTTTGGCAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGAGTCCGTGAGTCCCCCTTTTTGCAATGACAGCATTTCCACAGA
GAGGACCACACCCTGCTCACCTACTGTATGAAGGCAACATGAAAGATCAA
AGGCCAGGAGAGGCCAGAGGCCACCTAAGCTTGGGGTACGGAGGAATTTG
AGCCCATGTTCTTTCTAAGTTACATGCCAAGGGAGGCCCAGAACTGGCCT
TTGGCCAGTCTTAGCAGTCTGCCGGGCCAGCATCAGGGCCAGGATGACCC
TGAGGGGCTCTTGGAATGGGAAGGCAAGTGAGACTTTGCCTACTGTATCA
CTTCAATTAGGAAAATTGTGAGTTAAAAAAAAAGTGTCTGTGTGATAGAA
TGAATAGCTTTGAGTGAACCGAGACTCAGAAATCTGTCGCTGCTCTTCTG
TTTTTATGCTTTGTGCTTTCTTTGATAATTTCCCATCTGTCTCCCTTAGC
TTGGTAAGAAAGTTCCACTGGTAATGGAAAATTCCAAATGTGTGATGGGA
TAATGGCCAGGGAAGGCAGCCCAGCAGCACAGAGGCATGCCCATGGTGGG
GACAGGTCCTGCCACAACCCTGGACAAAGGCATGCCCATGGTGGGAAGAG
GTCATGCCCCTGCCCAAGGACAAAGGCATGCCAATGGCAGGGACAGGTCC
TGCCACAGTCCAGGACAGGAGTATGCTAACAAACAAAGGGCATGCCAGGC
TGATTCTCTGCCTGGCACTAGCATTTGGAAGAGGCCATTCTTTCTTGGGC
AAAACTATTCCCAAAGCTTCAGTTATTCTTGGCATCCTCAGCCCCATCCT
TTCAATGGCACCAGAAGCCTCGGTCTTTGTGACAAGCATACTTTTTCAAA
CACCTTATAGGCAGGGGTTGCCTCCAAACCCCCTAGGCGAAAGCCCCTGC
TTTGAAGATAAGGAAAAACCGAAAATTTACAAATGTAAAGAAAATGGAAC
TGTTTAAGGGGTGAGGTGAAAGATGAAAGGGTGAAAGGTGAAGGGGAAAG
GTCCCCTACTTTTCCCGGGTTGTCCTTCCCCGGCAAGGCTCCTCTTCTCT
TGGGGTTGGCTCAATTTTTTCTCCTTTCCCACCAGGAATCTAAATCCAAT
TTTTCCTTTTCCTTTAAAATGGTCCCCCCAAGCTCCCCCCTCCACCCTTA
GCAATCTTGAACCTCCGTGTGGCAAACACCAATCTGCTCCCTCCCAATGA
ATCAAAC
TTCTTTTTTTTCATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCTTTATGCTTAATATTTTTTACTCATTTTT
TTTGTTCTCCTCTTTTTTTTGCTTTGTTTGAAGCAGAATCTTACTATGTA
GCTCAGGATGGACCAAAACTCGTGATCCTCCCGTTTCTACCCTCAGAGTA
CTAGTGTTACAAGTATGCAATTACCACACCTAGTCCTCACTTGAGATTTT
GAGAGAGCTCCCTGTATGACCCAGATTGGCCTTGGATTTGACATTCTGCT
GATAGCTCCCGTGTTGGGGTTACAGGTATGAGCCACCATACTTGATCTGA
ATAGTTGTGAATACCTAATCCATGCCAGATACCAGTGATACAAAGTGACT
AAACTGAAGTGTCTCTACCCTCACGGGGACACAGCCTAGTGAAGGAGAAA
AGCATTTATTTGCAAAGTATTCATTGATGTGATTAGATATTGAGGTGCAT
GTTGTGGGACCTTAGAGATGGCTCAGAGGTTAAGGGCACTTGCTGCTCTT
CCAGAGGATCCAAGTTTGGTTCCCAGAACTCCTGTCAAATAGCACACAGC
ATCCTGTAACTCTAAGGGATCCAACCCCTCTCTGGCCTCTGCTGGTACCT
GCACACATGTGGCACACACACATACTGACACACATGTAAAAATAAAAAGA
AGCCTTTTGTTAAAAGGATGTGCAAGGTGTGGTGGTGCACACCTTTGATC
CCAGGACTCAGAAGGCAGAGGCAGGGGGATTTCTGTGAATCCCAGGTCAG
CTAAGATCCCCAGGGGACTCTGTTTCCAAACATAACAACAAACAAACAAA
CTAACTATCCAACATCAAACTTTGTAAGAAGAATGCTTACTGTCAAGGAA
TCACATGGGATACTGGTAGTGTTCACCAGTGATTTGAGGAGGCCAAAGGT
TTAGTTTTCTAAAAAAAGGTGATGGGAGCTTATACCTCGATTTTCAGAAC
CGTATAGGATCTCAAGTATTAAAGGGACTGGGGCCATAAAACTTGGAGGC
CCTGGAGGATCTATAAGAATTGTCTGCTTTAAATAGGGGTCTGGGGCTTG
TCATAAAAAACCCGTCCTCCCCAAAACCCTGATTTTGAGTTGGGTTCCAC
CCACCGGGGGTTTTACCTAAAATATTCCGGGCTGTGGATGGGGTTACTAA
TGTTTCTAAGTTGGGTGAGTACAAATAACCGTGTTTTCCTCCCCTCCTAT
CTTACTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_j13.b1 MSMg01no124_j13.b1 CHROMAT_FILE:
MSMg01no124_j13.b1 PHD_FILE: MSMg01no124_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:54 2005
         (684 letters)



>mm_chr1_134713521_134714604
          Length = 1084

 Score = 1226 bits (634), Expect = 0.0
 Identities = 675/696 (96%), Gaps = 12/696 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgacagcatttccacagagaggaccacaccctgctcacctactgtatgaaggcaacatg 60
           ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 189 atgacagcatttccacagagaggaccacaccttgctcacctactgtgtgaaggcaacatg 248

                                                                       
Query: 61  aaagatcaaaggccaggagaggccagaggccacctaagcttggggtacggaggaatttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aaagatcaaaggccaggagaggccagaggccacctaagcttggggtacggaggaatttga 308

                                                                       
Query: 121 gcccatgttctttctaagttacatgccaagggaggcccagaactggcctttggccagtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcccatgttctttctaagttacatgccaagggaggcccagaactggcctttggccagtct 368

                                                                       
Query: 181 tagcagtctgccgggccagcatcagggccaggatgaccctgaggggctcttggaatggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tagcagtctgccgggccagcatcagggccaggatgaccctgaggggctcttggaatggga 428

                                                                       
Query: 241 aggcaagtgagactttgcctactgtatcacttcaattaggaaaattgtgagttaaaaaaa 300
           ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aggcaagtgagactttgtctattgtatcacttcaattaggaaaattgtgagttaaaaaaa 488

                                                                       
Query: 301 aagtgtctgtgtgatagaatgaatagctttgagtgaaccgagactcagaaatctgtcgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 aagtgtctgtgtgatagaatgaatagctttgagtgaaccgagactcagaaatctgtcgct 548

                                                                       
Query: 361 gctcttctgtttttatgctttgtgctttctttgataatttcccatctgtctcccttagct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gctcttctgtttttatgctttgtgctttctttgataatttcccatctgtctcccttagct 608

                                                                       
Query: 421 tggtaagaaagttccactggtaatggaaaattccaaatgtgtgatgggataatggccagg 480
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 609 tggtaagaaagttccactggtaatggaaaattccaaatgtgtgatggggtgatggccagg 668

                                                                       
Query: 481 gaaggcagcccagcagcacagaggcatgcc------------catggtggggacaggtcc 528
           ||||||||||||||||||||||||||||||            ||||||||||||||||||
Sbjct: 669 gaaggcagcccagcagcacagaggcatgcctgtgtgctgtggcatggtggggacaggtcc 728

                                                                       
Query: 529 tgccacaaccctggacaaaggcatgcccatggtgggaagaggtcatgcccctgcccaagg 588
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tgccacaaccctggacaaaggcatgcccatggtgggaagaggtcatgcccctgcccaagg 788

                                                                       
Query: 589 acaaaggcatgccaatggcagggacaggtcctgccacagtccaggacaggagtatgctaa 648
           ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 789 acaaaggcatgccaatggcagggacagatcctgccacagtccaggacaggagaatgctaa 848

                                               
Query: 649 caaacaaagggcatgccaggctgattctctgcctgg 684
           || |||||||||||||||||||||||||||||||||
Sbjct: 849 cagacaaagggcatgccaggctgattctctgcctgg 884


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)