BAC Information

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BAC

Clone NameMSMg01-124O04
Chromosome1 (Build37)
Map Location 11,437,851 - 11,438,162
singlet/doubletsinglet
Overlap geneA830018L16Rik
Upstream geneCpa6, LOC433271, C030045D06Rik
Downstream geneLOC665262
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124O04.T7 (MSMg01no124_o04.b1)MSMg01-124O04.TJ (MSMg01no124_o04.g1)
ACCAG334125AG334126
length1,2411,203
length of high quality
(start - end)
425 (39 - 463)792 (84 - 875)
definitionCHROMAT_FILE: MSMg01no124_o04.b1 PHD_FILE: MSMg01no124_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:35 2005CHROMAT_FILE: MSMg01no124_o04.g1 PHD_FILE: MSMg01no124_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGAGTAANNNNNGGACACTGGGCGCTATAGACTCCTATAGGGAGAGGAT
CCGCGGAATTCTCCCCTGTAGGATGATCCCTTTAGGAGTTGAACAACCCT
TTTACAATGATTGACTATGACCATCAGAGAACACATAACTACAGCAAATC
TAAAGTTATGAAATAGTAATGAAAATAATTTTATGGTGGGGGTCACCATA
GCATGAGGAACTATATTAAGAAGTTTGCAGCACTATGAAGACTGAGAACC
ATTGATCTAGAATAATTTAGGAAACAAAATTCTGGGCATGTTTGTGGGAT
TATTTATAGATTGAATTGAGATGAGAAACCCCAAAGTAAGTGTGAGTGTC
ATAGCTGTGTGCATTAGCGTATCACAGTCTTCTTGCTGGCCAGTTGTTTC
ATGCTCCTGACCACATGTCTTCTTGTCTTCCTGCCATAATGAGCTGGACC
ATTGAACTGTTTTTCTACCACCCCCATTCCCCTCCTTAAATTGCTTTGAA
AAAAAGGGGATCACAAAACAGACGAAAGTAAGTACTGCTGTAGTCATTTA
CTTAACTTCTCTGCTGGCAAAGGAGACCACTGTAGTCTATTTAACTATAG
ACATAATTACACAGGATTTTGAAGACTAATCATTTTCCTAGCATGTGGGA
AGCATCAGGTACAAGGCCCTGATCAGAGGTTGTACTGTTAATTAAAAAGG
CTAGTAATGCCCTGTTACCTCAGTTTAAGCTGCTGAAATCACAAGTCCAC
TCACTCCTCTGGCCCAAGCTCATAGAACCATATGGCTATTTTATTCCCTG
TCTTGGCTTCTAGCTTCCTCTTGGTCAAAAATGCCCTATTTTGTGGCCTT
TAAAGATAATTTTCGATAGAAAAAATGTCCTCCAAATAGACCTTAAATTC
CTCCACATCCCTCATGTCCCTATAAAATTTTCCCCCTCCGCCTGTTTCCC
TGGGCCTCCGTTCCCTCCCCTGCCTGTTACTAAAATCCCCCCGCTTTTAA
TCCTCCTTGAATATATGGCACAAAAAATTTTGGGAAAGGCGAACTTTCAC
AAATACCAAACCCTCCCGTACCTTTTTGAAAAAATGGACACCCAAAATTT
TCCCTCCTCTTAAAATCTCTGCCTGCATAACACCACCCCTCCCCTGGGCT
CCAACAAATCTTTAGGCGCCCTTTCAAATGGCGCCGCAACTTTTCGCGCC
TTATCACTCTTGGTCCTGCAGCACATCTTCCTCCCTTAAAG
CTTTCTTANNNATTCATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTTTTTGTTTAGCTCTGTACCCCATT
CTTAATAGGGTTATCCGTTTCTCTGGAGTCTAACTTCTTGAGTTCTTTGT
ACATATTGGATAGCCCCCTATCTGATTTAGGATTGGTAAAGATCCTTTCC
CAATCTATTGGTGGCCTTTTTGTCTTATTGACAGTGTCTTTTGCCTTACA
GAAGTTTGCAATTTTATAAGGTCCTATTTGTTGATTCTCTATCTTACAGC
ACAAGCCATTGCTGTTCTATTTAGGAAAATTTCCCCTGTGCCCATATCTT
CGAGGCTTTTCCCCACTTTCTCCTCTATGAGTTTCAGTGTATCTCGTTTT
ATGTGGAGGTCCTTGATCCACTTGGACTTCAGCTTTGAATAGTAGATGTA
TGTTCTTTCCAGTTTCTTTTTGGAGGCACTGAGAGTTATGTGTTTTCCTC
TTAGGACTGATATCATTGTGTCCCATAAGTTTGGGTATGTTGTGGCTTCT
TTTTCATTAAACTCTAAAAAGACTTTAATTTTTTTCTTTTTTTCTTCCTT
TACCAAGTTATCATTGAGCAGAGTTTTGTTCAGCTTCCATGTGTATATGG
GCTTTCTATTATTTATGTTGTTATTGAAGATTAGCCTTAGTCTGTGGTGA
TCTGATAGGATGCATAGAGTTATTTCAATCTTCTTGTATCTGTTGAGGCC
TGTTTTGTGACCAATTATATGGTCATTTTTGGAGAATATCATGAGGTGCT
AAGAAGAAGGTTTATCCTTTTGTTTTAGGATAAAATGTTCTGTAGATATC
TGTTAAATCCATTTGTTTCATAACTTCTGTTAGTTTCACTGTGTCTATGT
TTTTCGTTTCCAGGATCTGTCCATTGATAAGAATGGGGTATTAAAGTCTT
CCACAATTATTGTGTGCAGTGCAATGTATTCCTTGAACTTTAGTAAAGTT
TCTTTTTATGAAGGGGTATGCTCTTGCATTTGGAAGCATAAAGGTTTAAA
AATTGAAAATTCCCCCTTGGGAAATTTTACCCTTTGAGGAAAAAAAAAGG
GGCCCCCCTTCCCTCCCCTTTGTAAAACTTTTAAGTGGAAGGGGGAATTT
TTCTTGGAATTATTAAGGAGACCTCTCCCGCTGTTTTTTTTTTGTGACCT
TTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_o04.b1 MSMg01no124_o04.b1 CHROMAT_FILE:
MSMg01no124_o04.b1 PHD_FILE: MSMg01no124_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:35 2005
         (425 letters)



>mm_chr1_11437338_11438162
          Length = 825

 Score =  526 bits (272), Expect = e-153
 Identities = 302/312 (96%)
 Strand = Plus / Minus

                                                                       
Query: 111 tctaaagttatgaaatagtaatgaaaataattttatggtgggggtcaccatagcatgagg 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 tctaaagttatgaaatagtaatgaaaataattttatggtgggggtcaccatagcatgagg 766

                                                                       
Query: 171 aactatattaagaagtttgcagcactatgaagactgagaaccattgatctagaataattt 230
           ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 765 aactatattaagaagtttgcagcactaggaaggctgagaaccattgatctagaataattt 706

                                                                       
Query: 231 aggaaacaaaattctgggcatgtttgtgggattatttatagattgaattgagatgagaaa 290
           ||||||||||| |||||||||||||||||||  |||| ||||||||||||||||||||||
Sbjct: 705 aggaaacaaaaatctgggcatgtttgtgggagaatttgtagattgaattgagatgagaaa 646

                                                                       
Query: 291 ccccaaagtaagtgtgagtgtcatagctgtgtgcattagcgtatcacagtcttcttgctg 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ccccaaagtaagtgtgagtgtcatagctgtgtgcattagcgtatcacagtcttcttgctg 586

                                                                       
Query: 351 gccagttgtttcatgctcctgaccacatgtcttcttgtcttcctgccataatgagctgga 410
           |||||||||||||||||| |||||||||||||||||||||||||||  | ||||||||||
Sbjct: 585 gccagttgtttcatgctcttgaccacatgtcttcttgtcttcctgctgtgatgagctgga 526

                       
Query: 411 ccattgaactgt 422
           ||||||||||||
Sbjct: 525 ccattgaactgt 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)