BAC Information

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BAC

Clone NameMSMg01-125B02
Chromosome1 (Build37)
Map Location 50,582,673 - 50,583,189
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneTmeff2, Sdpr, LOC383504, Obfc2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125B02.T7 (MSMg01no125_b02.b1)MSMg01-125B02.TJ (MSMg01no125_b02.g1)
ACCAG334257AG334258
length700696
length of high quality
(start - end)
606 (52 - 657)517 (78 - 594)
definitionCHROMAT_FILE: MSMg01no125_b02.b1 PHD_FILE: MSMg01no125_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:59 2005CHROMAT_FILE: MSMg01no125_b02.g1 PHD_FILE: MSMg01no125_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTCCTCGGTTCCCGTCACCTTTTGGTGAGCATTTACATG
GGACACAAATATCTTCACATCCTTTGCCCATTTGGGGAGATCTATCCACA
TACTTCTTCCCCAGATGTCTTTCTCACGAATTTTCCAATTGTGATCTTTC
CAAGTCCCTGACAATCCAGCCAATCCATTGGCTACAGCCCATGAGTCAGT
GAATAATCGCACATCTGGCCATTTCTTCTTACAAACAAACTGTAATACCA
TGTGTACTGCCCGCAGTTCTGCCCACTGTGAAGATTTCCCTTCACCTGTG
TCTTTCAGGGTTGTCCCAGAAAGGGGTTGTAATGCTGCAGCTGTCCACTT
CTGGGTGGTGCCTGCATAATGTGCAGAGCCATCAGTAAACCAGGCCCTAG
TCTTCTCCTCTTCGGTCAGTCGATCATAGGGAACACCCCATGAGGCTATA
GGCACATGCTTGGCAGCAGATGGCATTGTAACAGGAGTAGAAACCATAGG
CATTTGAGCAACTTCTTCAAGTAACTTGCTTGTGCCTTCAGTCTTACATG
CACCAGACTCGCCAGCAAGAATGACACTGCAACAGGATCCTTCTGCATAC
TTTATTGGGAGAGCTTGATTGCAGAGGAGAGAGACCCAAGCCCAGAACTG

NNCCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACATTAAATAAAATCCCCCAACC
TCAGCACAATGAATAATGTATATCTTAGAATATAAATTCTGTGTTATGAG
CAATAAAGACCTAAATTCTCATTGCTCTCTGTACCTTCAGGAAGAAAACA
TAGTTGACTTTCACTACTGTTTCTTCTAAGAGGAAGAGTTTTCTAGGAAG
AAAATAATTTCTGTTGATTCAGAACATCTATCATAGTTTAAAGAGAATTC
CAGAAATGACAGTTATCTTATTTAGATAAGGCGACACATTACAGCTTCCA
TCCCTGTTCTCTTTTCTCATACAGTGAGATCTATGTAGAGACAAAATTAC
TCTATCAGATCAAGTAAGTGTCAAAGTCAAACCTCATCTTACACATTTTG
CATTTTGTATCTCCTTGAATTCATCTTTCAGCTCTGTGGAGGACATTTCA
AGTGGATTTCTGCTTATTCCTGGTTACATTGAATGATAATGCTGACTGAA
ATTATTTTCTGGAGAAAGGTTATTGTCAGGACTTGTAGTGCCTTGCAAAT
GCAGTTACAGGTTTTTAACAATTGGATTTGACATGAATGAAATAGCTCAG
AATGTCAGTGCTCACTATTGAAACTACATTTTAATTCTAATTCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_b02.g1 MSMg01no125_b02.g1 CHROMAT_FILE:
MSMg01no125_b02.g1 PHD_FILE: MSMg01no125_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:59 2005
         (517 letters)



>mm_chr1_50582473_50583389
          Length = 917

 Score =  992 bits (513), Expect = 0.0
 Identities = 516/517 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acattaaataaaatcccccaacctcagcacaatgaataatgtatatcttagaatataaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 acattaaataaaatcccccaacctcagcacaatgaataatgtatatcttagaatataaat 658

                                                                       
Query: 61  tctgtgttatgagcaataaagacctaaattctcattgctctctgtaccttcaggaagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tctgtgttatgagcaataaagacctaaattctcattgctctctgtaccttcaggaagaaa 598

                                                                       
Query: 121 acatagttgactttcactactgtttcttctaagaggaagagttttctaggaagaaaataa 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 597 acatagttgactttcactactatttcttctaagaggaagagttttctaggaagaaaataa 538

                                                                       
Query: 181 tttctgttgattcagaacatctatcatagtttaaagagaattccagaaatgacagttatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tttctgttgattcagaacatctatcatagtttaaagagaattccagaaatgacagttatc 478

                                                                       
Query: 241 ttatttagataaggcgacacattacagcttccatccctgttctcttttctcatacagtga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ttatttagataaggcgacacattacagcttccatccctgttctcttttctcatacagtga 418

                                                                       
Query: 301 gatctatgtagagacaaaattactctatcagatcaagtaagtgtcaaagtcaaacctcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gatctatgtagagacaaaattactctatcagatcaagtaagtgtcaaagtcaaacctcat 358

                                                                       
Query: 361 cttacacattttgcattttgtatctccttgaattcatctttcagctctgtggaggacatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 cttacacattttgcattttgtatctccttgaattcatctttcagctctgtggaggacatt 298

                                                                       
Query: 421 tcaagtggatttctgcttattcctggttacattgaatgataatgctgactgaaattattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tcaagtggatttctgcttattcctggttacattgaatgataatgctgactgaaattattt 238

                                                
Query: 481 tctggagaaaggttattgtcaggacttgtagtgcctt 517
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 tctggagaaaggttattgtcaggacttgtagtgcctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)