BAC Information

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BAC

Clone NameMSMg01-125B04
Chromosome1 (Build37)
Map Location 173,577,801 - 173,578,111
singlet/doubletsinglet
Overlap geneSlamf7
Upstream geneOlfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9
Downstream geneCd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125B04.T7 (MSMg01no125_b04.b1)MSMg01-125B04.TJ (MSMg01no125_b04.g1)
ACCAG334261AG334262
length705735
length of high quality
(start - end)		603 (53 - 655)311 (75 - 385)
definitionCHROMAT_FILE: MSMg01no125_b04.b1 PHD_FILE: MSMg01no125_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:59 2005CHROMAT_FILE: MSMg01no125_b04.g1 PHD_FILE: MSMg01no125_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATG
CGCGGAATTCTCACCTGATTCCCACCGAATGGCAGAGAAGCACCTGAAAA
AATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTG
AGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGA
CAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTT
GGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTC
CTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCT
GGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCA
CTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTAGAAAGAACCT
AGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACAC
AATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAG
CCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCA
CAAAGAAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCA
AACCTAGGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACT
CAAGA

NTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATCGAAGCTTGCATTGTTAGGAAGCA
CCTGGCCTATGTAGCTTGTCCAAAAAACAGTCTTGTTTCTAAAATTTCTC
CCTGAACGGAAATGATGATCAGAATTAGAACTTACAGGGGAGGTAGGGGA
GGGCATGCCAGGGCTTTGCAAAGCCCAGGTGCTCACCTGAAATAAATGTA
TCACAATGGTCTATAAGGGGGGGGGGTAGCTCTCGCAGCCTTGATGTTCT
CATCAGGATAAGGGTCCAGCAGTCTGTTCCTCTGAGTGTTTTATAATGAC
TGGGAAATACAATGGTTTCAAGGAAAACAAAGATGAGTGGGGGGGGGGTG
ATGTGCAGCCCCTCCTCCCCCAACATTTAACATCGCCTTCCCCCTTATCC
TAAACCCCCCTCCCCATTCTTTTTTTTTTCCCATTCTCTCCAATTCTTTC
CACCCCTCCATCCATATTCAAACTCACCCCCTATTCCCTTTTACCATAAC
CTCCCATCCCTTTCCCCCCCCACCCCCCTCCCTTCTTTTTTTTTACCTTC
TTCCCCCTTCTCCATCATCCCATCCTTACCATTTATTATATCCCCTTTAC
ACTCTTCCCCCCCCTCTATTTTACCCTTCCCTCTTCACATATACCCCCTA
TTTGCCCCCCAAATACCTCCTCCCACCTATTACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_b04.g1 MSMg01no125_b04.g1 CHROMAT_FILE:
MSMg01no125_b04.g1 PHD_FILE: MSMg01no125_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:59 2005
         (311 letters)



>mm_chr1_173577601_173578311
          Length = 711

 Score =  601 bits (311), Expect = e-176
 Identities = 311/311 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcgaagcttgcattgttaggaagcacctggcctatgtagcttgtccaaaaaacagtctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 atcgaagcttgcattgttaggaagcacctggcctatgtagcttgtccaaaaaacagtctt 452

                                                                       
Query: 61  gtttctaaaatttctccctgaacggaaatgatgatcagaattagaacttacaggggaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gtttctaaaatttctccctgaacggaaatgatgatcagaattagaacttacaggggaggt 392

                                                                       
Query: 121 aggggagggcatgccagggctttgcaaagcccaggtgctcacctgaaataaatgtatcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 aggggagggcatgccagggctttgcaaagcccaggtgctcacctgaaataaatgtatcac 332

                                                                       
Query: 181 aatggtctataaggggggggggtagctctcgcagccttgatgttctcatcaggataaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aatggtctataaggggggggggtagctctcgcagccttgatgttctcatcaggataaggg 272

                                                                       
Query: 241 tccagcagtctgttcctctgagtgttttataatgactgggaaatacaatggtttcaagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tccagcagtctgttcctctgagtgttttataatgactgggaaatacaatggtttcaagga 212

                      
Query: 301 aaacaaagatg 311
           |||||||||||
Sbjct: 211 aaacaaagatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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